Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G084300.1 | Wheat | cytosol, nucleus, plasma membrane | 99.36 | 99.36 |
| TraesCS6B01G126800.1 | Wheat | plasma membrane | 95.3 | 95.66 |
| TraesCS6A01G098500.2 | Wheat | cytosol, peroxisome, plasma membrane | 95.68 | 94.6 |
| EER90148 | Sorghum | plasma membrane | 87.04 | 85.52 |
| Zm00001d046919_P001 | Maize | plasma membrane | 86.15 | 84.64 |
| HORVU0Hr1G015220.3 | Barley | cytosol | 41.42 | 79.32 |
| Os12t0438600-01 | Rice | plasma membrane | 14.61 | 75.66 |
| GSMUA_Achr3P16100_001 | Banana | plasma membrane | 67.73 | 73.52 |
| VIT_14s0068g02190.t01 | Wine grape | plasma membrane | 69.63 | 69.45 |
| PGSC0003DMT400017962 | Potato | peroxisome, plasma membrane, vacuole | 69.12 | 69.39 |
| Solyc02g068080.2.1 | Tomato | peroxisome, plasma membrane, vacuole | 69.0 | 69.26 |
| Bra028478.1-P | Field mustard | plasma membrane | 67.34 | 68.83 |
| CDX67478 | Canola | plasma membrane | 67.34 | 68.83 |
| CDY11722 | Canola | plasma membrane | 67.22 | 68.7 |
| CDY15925 | Canola | plasma membrane | 67.22 | 68.17 |
| Bra030328.1-P | Field mustard | plasma membrane | 67.22 | 68.17 |
| KRG94508 | Soybean | plasma membrane | 68.36 | 68.1 |
| KRH57669 | Soybean | plasma membrane | 67.22 | 68.08 |
| KRH06955 | Soybean | plasma membrane | 64.42 | 68.05 |
| AT3G27170.1 | Thale cress | plasma membrane | 67.34 | 67.95 |
| CDY34173 | Canola | plasma membrane | 67.34 | 67.95 |
| AT5G40890.1 | Thale cress | plasma membrane | 66.84 | 67.87 |
| CDY13685 | Canola | plasma membrane | 67.47 | 67.82 |
| CDX83663 | Canola | plasma membrane | 67.47 | 67.82 |
| Bra025253.1-P | Field mustard | plasma membrane | 67.47 | 67.82 |
| CDX99630 | Canola | plasma membrane | 66.58 | 67.53 |
| Bra032985.1-P | Field mustard | plasma membrane | 67.09 | 67.43 |
| CDY28488 | Canola | plasma membrane | 67.09 | 67.43 |
| Solyc02g094060.2.1 | Tomato | plasma membrane | 62.39 | 64.35 |
| PGSC0003DMT400052072 | Potato | plasma membrane | 63.15 | 64.21 |
| VIT_14s0068g02330.t01 | Wine grape | cytosol, extracellular | 5.84 | 56.1 |
| VIT_00s0316g00020.t01 | Wine grape | cytosol | 5.97 | 55.95 |
| TraesCS2B01G326900.1 | Wheat | plasma membrane | 52.86 | 51.68 |
| TraesCS3B01G144700.1 | Wheat | cytosol, nucleus, plasma membrane | 51.21 | 50.06 |
| TraesCS5B01G457100.1 | Wheat | plasma membrane | 49.17 | 48.86 |
| TraesCS3B01G418700.1 | Wheat | mitochondrion | 48.92 | 48.43 |
| TraesCS2B01G546000.1 | Wheat | plasma membrane | 49.94 | 48.1 |
| TraesCS4B01G035500.1 | Wheat | plasma membrane | 40.66 | 39.7 |
Protein Annotations
| Gene3D:1.10.3080.10 | MapMan:24.2.16 | Gene3D:3.10.580.10 | InterPro:CBS_dom | InterPro:Cl-channel_core | InterPro:Cl-channel_volt-gated |
| InterPro:Cl_channel_pln | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005247 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0006821 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0055085 | InterPro:IPR000644 | InterPro:IPR014743 |
| PFAM:PF00571 | PFAM:PF00654 | PRINTS:PR00762 | PRINTS:PR01120 | PFscan:PS51371 | PANTHER:PTHR11689 |
| PANTHER:PTHR11689:SF67 | SMART:SM00116 | SUPFAM:SSF54631 | SUPFAM:SSF81340 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6B01G126400 |
| EnsemblPlants:TraesCS6B01G126400.1 | TIGR:cd03685 | TIGR:cd04591 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6B:-:121812480..121815250
Molecular Weight (calculated)
85958.6 Da
IEP (calculated)
8.069
GRAVY (calculated)
0.370
Length
787 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDQSPGLG LVAETPGLKH GNGVSNSSED PGSAGDGISS LEKPLLKRSN TLTSSHLAMV GAKVSHIESL DYEIIENDLF KHDWRSRSNV EVLQYIFLKW
101: SLAFLVGLLT GVIASLINLA IENISGLKML HMVHLVREKR YWAGFFYFSG FNFVLTFIAA VLCVVFAPTA AGPGIPEIKA YLNGVDTPNM FGAPQLIVKI
201: IGSICAVSSG LDLGKEGPLV HIGACLANLL SQGGSGRFRL RWRWLRYFNN DRDRRDLITC GASSGVCAAF RSPVGGVLFA LEEVATWWRS ALLWRTFFST
301: ATVVVVLRGF IEVCRGGRCG LFGEGGLIIF DVSDVTVRYR LGDLLLVTLV GVIGGVLGAL YNHVLHMVLR LYNLINDKGR MAKLALALAV CVFTSAGLYV
401: LPFAVPCTPC DPAFGAACPA TGRSGNFKQF NCPAGQYNDL ATLLHATNVD ATRNIFSTGT PGEFRLDSLL IFFAIYCVLG LFTFGIAVPS GLFLPIILMG
501: AAYGRIVALV LQSTVAASID HGLYAVLGAA ALMSGSMRMT VSLCVIFLEL TNNLLLLPMT MFVLLIAKTV GDAFNPSIYE IILDLKGLPF LEPKPEPWMK
601: DLTVGELAAA KPRTISLQVV EKVSTVLEVL QNTGHNGFPV VDRPRPGLSE LHGLVLRSHL VAVLRKRWFL AEKRRTEEWE ARERFSSVEL ADKNCKIDDL
701: ELTPEELEMY VDLHPFTNTT PYTVVETMSV AKAVVLFRSV ALRHMLIMPK YQGPEISPLV GILTRQDLRA HNILGAFPHL AKKSKTH
101: SLAFLVGLLT GVIASLINLA IENISGLKML HMVHLVREKR YWAGFFYFSG FNFVLTFIAA VLCVVFAPTA AGPGIPEIKA YLNGVDTPNM FGAPQLIVKI
201: IGSICAVSSG LDLGKEGPLV HIGACLANLL SQGGSGRFRL RWRWLRYFNN DRDRRDLITC GASSGVCAAF RSPVGGVLFA LEEVATWWRS ALLWRTFFST
301: ATVVVVLRGF IEVCRGGRCG LFGEGGLIIF DVSDVTVRYR LGDLLLVTLV GVIGGVLGAL YNHVLHMVLR LYNLINDKGR MAKLALALAV CVFTSAGLYV
401: LPFAVPCTPC DPAFGAACPA TGRSGNFKQF NCPAGQYNDL ATLLHATNVD ATRNIFSTGT PGEFRLDSLL IFFAIYCVLG LFTFGIAVPS GLFLPIILMG
501: AAYGRIVALV LQSTVAASID HGLYAVLGAA ALMSGSMRMT VSLCVIFLEL TNNLLLLPMT MFVLLIAKTV GDAFNPSIYE IILDLKGLPF LEPKPEPWMK
601: DLTVGELAAA KPRTISLQVV EKVSTVLEVL QNTGHNGFPV VDRPRPGLSE LHGLVLRSHL VAVLRKRWFL AEKRRTEEWE ARERFSSVEL ADKNCKIDDL
701: ELTPEELEMY VDLHPFTNTT PYTVVETMSV AKAVVLFRSV ALRHMLIMPK YQGPEISPLV GILTRQDLRA HNILGAFPHL AKKSKTH
001: MVEEDLNQIG GNSNYNGEGG DPESNTLNQP LVKANRTLSS TPLALVGAKV SHIESLDYEI NENDLFKHDW RKRSKAQVLQ YVFLKWTLAC LVGLFTGLIA
101: TLINLAVENI AGYKLLAVGH FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC
301: NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI
401: DEICPTNGRS GNFKQFHCPK GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL PIILMGAAYG RMLGAAMGSY
501: TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM
701: YVDLHPLTNT TPYTVMENMS VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH
101: TLINLAVENI AGYKLLAVGH FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC
301: NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI
401: DEICPTNGRS GNFKQFHCPK GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL PIILMGAAYG RMLGAAMGSY
501: TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM
701: YVDLHPLTNT TPYTVMENMS VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH
Arabidopsis Description
CLC-BChloride channel protein [Source:UniProtKB/TrEMBL;Acc:A0A178VKG6]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.