Factsheet for Solyc02g068080.2.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, plasma membrane

Predictor Summary:

nucleus 1
vacuole 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome, plasma membrane, vacuole
Any Predictor:	nucleus, peroxisome, secretory
BaCelLo:	nucleus
MultiLoc:	vacuole
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc03g120880.2.1
Solyc05g015640.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40890.1	Solyc05g015640.2.1	AT1G27300.1	21798944
AT5G40890.1	Solyc03g120880.2.1	AT3G16310.1	21798944
AT5G40890.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT5G40890.1	Solyc03g005980.2.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017962	Potato	peroxisome, plasma membrane, vacuole	98.98	98.98
VIT_14s0068g02190.t01	Wine grape	plasma membrane	82.91	82.38
Solyc02g094060.2.1	Tomato	plasma membrane	79.21	81.39
KRG94508	Soybean	plasma membrane	80.1	79.49
KRH57669	Soybean	plasma membrane	78.57	79.28
KRH06955	Soybean	plasma membrane	74.49	78.39
Bra028478.1-P	Field mustard	plasma membrane	76.91	78.31
CDY11722	Canola	plasma membrane	76.91	78.31
CDX67478	Canola	plasma membrane	76.79	78.18
Bra030328.1-P	Field mustard	plasma membrane	77.04	77.84
AT3G27170.1	Thale cress	plasma membrane	77.42	77.82
CDY15925	Canola	plasma membrane	76.91	77.71
CDX99630	Canola	plasma membrane	76.66	77.45
CDX83663	Canola	plasma membrane	77.3	77.39
CDY34173	Canola	plasma membrane	76.91	77.31
AT5G40890.1	Thale cress	plasma membrane	76.28	77.16
Bra025253.1-P	Field mustard	plasma membrane	76.91	77.01
CDY13685	Canola	plasma membrane	76.79	76.88
Bra032985.1-P	Field mustard	plasma membrane	76.79	76.88
CDY28488	Canola	plasma membrane	76.53	76.63
GSMUA_Achr3P16100_001	Banana	plasma membrane	68.24	73.79
VIT_14s0068g02330.t01	Wine grape	cytosol, extracellular	7.65	73.17
TraesCS6D01G084300.1	Wheat	cytosol, nucleus, plasma membrane	69.39	69.12
TraesCS6B01G126400.1	Wheat	plasma membrane	69.26	69.0
TraesCS6B01G126800.1	Wheat	plasma membrane	68.62	68.62
TraesCS6D01G084000.2	Wheat	plasma membrane	68.24	68.24
TraesCS6A01G098600.1	Wheat	plasma membrane	67.6	68.12
VIT_00s0316g00020.t01	Wine grape	cytosol	7.27	67.86
Zm00001d046919_P001	Maize	plasma membrane	68.62	67.17
EER90148	Sorghum	plasma membrane	68.62	67.17
TraesCS6A01G098500.2	Wheat	cytosol, peroxisome, plasma membrane	67.22	66.21
HORVU0Hr1G015220.3	Barley	cytosol	30.74	58.64
Os12t0438600-01	Rice	plasma membrane	10.59	54.61
Solyc10g044470.1.1	Tomato	plasma membrane	52.42	53.8
Solyc01g103140.2.1	Tomato	plasma membrane	52.68	53.29
Solyc07g007690.2.1	Tomato	plasma membrane	52.3	52.03
Solyc09g075800.2.1	Tomato	plasma membrane	41.96	41.49

Protein Annotations

Gene3D:1.10.3080.10	MapMan:24.2.16	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated
InterPro:Cl_channel_pln	GO:GO:0003674	GO:GO:0005215	GO:GO:0005216	GO:GO:0005247	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006810	GO:GO:0006811
GO:GO:0006821	GO:GO:0008150	GO:GO:0009671	GO:GO:0009705	GO:GO:0015706	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	GO:GO:1902476	GO:GO:1902600	InterPro:IPR000644	InterPro:IPR014743
UniProt:K4B7E0	PFAM:PF00654	PRINTS:PR00762	PRINTS:PR01120	PFscan:PS51371	PANTHER:PTHR11689
PANTHER:PTHR11689:SF67	SMART:SM00116	SUPFAM:SSF54631	SUPFAM:SSF81340	EnsemblPlantsGene:Solyc02g068080.2	EnsemblPlants:Solyc02g068080.2.1
TMHMM:TMhelix	UniParc:UPI0002767758	SEG:seg	:	:	:

Description

Chloride channel protein [Source:UniProtKB/TrEMBL;Acc:K4B7E0]

Coordinates

chr2:-:38125655..38129776

Molecular Weight (calculated)

86473.5 Da

IEP (calculated)

8.725

GRAVY (calculated)

0.320

Length

784 amino acids

Sequence
(BLAST)

001: MEEPRLVEEA TTNDINGQLN EEERDPESNS LRQPLLKRNR TLSSSPFALV GAKVSHIESL DYEINENDLF KHDWRRRSRV QVLQYVFLKW SLAFLVGLLT
101: GVTATLINLA IENIAGYKLR AVVDYIDNRR YLMGFAYFAG ANFVLTLIAA LLCVCFAPTA AGPGIPEIKA YLNGVDTPNM FGATTLFVKI IGSIAAVSAS
201: LDLGKEGPLV HIGACFASLL GQGGPDNYRL KWRWLRYFNN DRDRRDLITS GSSSGVCAAF RSPVGGVLFA LEEVATWWRS ALLWRTFFST AVVVVILRAF
301: IEYCKSGKCG LFGKGGLIMF DVSGVSVTYH PVDIIPIALI GIIGGLLGSL YNYVLHKVLR LYNLINEKGK LHKLLLALSV SLFTSISMYG LPFLAKCKPC
401: DPSIQGSCPG TGGTGNFKQF NCPNGYYNDL ATLLLTTNDD AVRNIFSINT PGEFQVSSLI IYFVLYCILG LITFGIAVPS GLFLPIILMG SAYGRLLAIA
501: MGSYTKIDPG LYAVLGAASL MAGSMRMTVS LCVIFLELTN NLLLLPITML VLLISKSVGD CFNLSIYEII LELKGLPFLD ANPEPWMRNI TVGELADVKP
601: PVVTLRGIEK VGRIVEVLKN TTHNGFPVVD EGVVPPVGLP IGATELHGIV LRTHLLLVLK KKLFLHERRR TEEWEVREKF SWIDLAERWG KIEDVAVTKS
701: EMEMYVDLHP LTNTTPYTVV ESMSVAKAMV LFRQVGLRHM LIVPKYQAAG VSPVVGILTR QDLRAHNILT VFPHLVKSKS GKKH

Best Arabidopsis Sequence Match ( AT3G27170.1 )
(BLAST)

001: MVEEDLNQIG GNSNYNGEGG DPESNTLNQP LVKANRTLSS TPLALVGAKV SHIESLDYEI NENDLFKHDW RKRSKAQVLQ YVFLKWTLAC LVGLFTGLIA
101: TLINLAVENI AGYKLLAVGH FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC
301: NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI
401: DEICPTNGRS GNFKQFHCPK GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL PIILMGAAYG RMLGAAMGSY
501: TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM
701: YVDLHPLTNT TPYTVMENMS VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH

Arabidopsis Description

CLC-BChloride channel protein [Source:UniProtKB/TrEMBL;Acc:A0A178VKG6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.