Factsheet for TraesCS6D01G084300.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G340600.1
TraesCS1D01G342600.1
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G345400.1
TraesCS3A01G274800.1
TraesCS3A01G313000.1
TraesCS3B01G158900.1
TraesCS3B01G308400.1
TraesCS3D01G141300.1
TraesCS3D01G274500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G40890.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT5G40890.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT5G40890.1	TraesCS2D01G345400.1	AT1G27300.1	21798944
AT5G40890.1	TraesCS1A01G340600.1	AT3G16310.1	21798944
AT5G40890.1	TraesCS1D01G342600.1	AT3G16310.1	21798944
AT5G40890.1	TraesCS3A01G274800.1	AT3G16310.1	21798944
AT5G40890.1	TraesCS3A01G313000.1	AT3G16310.1	21798944
AT5G40890.1	TraesCS3B01G158900.1	AT3G16310.1	21798944
AT5G40890.1	TraesCS3B01G308400.1	AT3G16310.1	21798944
AT5G40890.1	TraesCS3D01G141300.1	AT3G16310.1	21798944
AT5G40890.1	TraesCS3D01G274500.1	AT3G16310.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G126400.1	Wheat	plasma membrane	99.36	99.36
TraesCS6D01G084000.2	Wheat	plasma membrane	94.92	95.28
TraesCS6A01G098500.2	Wheat	cytosol, peroxisome, plasma membrane	95.93	94.85
EER90148	Sorghum	plasma membrane	87.17	85.64
Zm00001d046919_P001	Maize	plasma membrane	86.28	84.77
HORVU0Hr1G015220.3	Barley	cytosol	41.68	79.81
Os12t0438600-01	Rice	plasma membrane	14.74	76.32
GSMUA_Achr3P16100_001	Banana	plasma membrane	67.73	73.52
PGSC0003DMT400017962	Potato	peroxisome, plasma membrane, vacuole	69.25	69.52
Solyc02g068080.2.1	Tomato	peroxisome, plasma membrane, vacuole	69.12	69.39
VIT_14s0068g02190.t01	Wine grape	plasma membrane	69.5	69.33
Bra028478.1-P	Field mustard	plasma membrane	67.22	68.7
CDX67478	Canola	plasma membrane	67.22	68.7
CDY11722	Canola	plasma membrane	67.09	68.57
KRG94508	Soybean	plasma membrane	68.36	68.1
KRH06955	Soybean	plasma membrane	64.42	68.05
CDY15925	Canola	plasma membrane	67.09	68.04
Bra030328.1-P	Field mustard	plasma membrane	67.09	68.04
KRH57669	Soybean	plasma membrane	67.09	67.95
CDY34173	Canola	plasma membrane	67.34	67.95
AT3G27170.1	Thale cress	plasma membrane	67.34	67.95
AT5G40890.1	Thale cress	plasma membrane	66.71	67.74
CDY13685	Canola	plasma membrane	67.34	67.69
Bra025253.1-P	Field mustard	plasma membrane	67.34	67.69
CDX83663	Canola	plasma membrane	67.34	67.69
CDY28488	Canola	plasma membrane	67.09	67.43
Bra032985.1-P	Field mustard	plasma membrane	67.09	67.43
CDX99630	Canola	plasma membrane	66.45	67.4
Solyc02g094060.2.1	Tomato	plasma membrane	62.39	64.35
PGSC0003DMT400052072	Potato	plasma membrane	63.28	64.34
VIT_14s0068g02330.t01	Wine grape	cytosol, extracellular	5.84	56.1
VIT_00s0316g00020.t01	Wine grape	cytosol	5.97	55.95
TraesCS3D01G126700.1	Wheat	plasma membrane	38.5	52.88
TraesCS2D01G308100.1	Wheat	plasma membrane	52.86	51.68
TraesCS3D01G126600.1	Wheat	plasma membrane	51.08	49.94
TraesCS5D01G456000.1	Wheat	plasma membrane	48.79	48.48
TraesCS2D01G519000.2	Wheat	plasma membrane	50.19	48.29
TraesCS3D01G379600.1	Wheat	plasma membrane, plastid	48.67	48.24
TraesCS4D01G033500.1	Wheat	plasma membrane	40.53	39.73

Protein Annotations

Gene3D:1.10.3080.10	MapMan:24.2.16	Gene3D:3.10.580.10	InterPro:CBS_dom	InterPro:Cl-channel_core	InterPro:Cl-channel_volt-gated
InterPro:Cl_channel_pln	GO:GO:0003674	GO:GO:0005215	GO:GO:0005247	GO:GO:0005575	GO:GO:0006810
GO:GO:0006821	GO:GO:0008150	GO:GO:0016020	GO:GO:0055085	InterPro:IPR000644	InterPro:IPR014743
PFAM:PF00571	PFAM:PF00654	PRINTS:PR00762	PRINTS:PR01120	PFscan:PS51371	PANTHER:PTHR11689
PANTHER:PTHR11689:SF67	SMART:SM00116	SUPFAM:SSF54631	SUPFAM:SSF81340	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6D01G084300
EnsemblPlants:TraesCS6D01G084300.1	TIGR:cd03685	TIGR:cd04591	SEG:seg	:	:

Description

No Description!

Coordinates

chr6D:+:49218337..49221095

Molecular Weight (calculated)

85989.7 Da

IEP (calculated)

8.279

GRAVY (calculated)

0.360

Length

787 amino acids

Sequence
(BLAST)

001: MEEDQSRGLG LAGETPGLKH GNGVSNSSED PGSAGDGISS LEKPLLKRSN TLTSSHLAMV GAKVSHIESL DYEIIENDLF KHDWRSRSNV EVLQYIFLKW
101: SLAFLVGLLT GVIASLINLA IENISGLKML HMVHLVREKR YWAGFFYFSG FNFVLTFIAA VLCVVFAPTA AGPGIPEIKA YLNGVDTPNM FGAPQLIVKI
201: IGSICAVSSG LDLGKEGPLV HIGACLANLL SQGGSGRFRL RWRWLRYFNN DRDRRDLITC GASSGVCAAF RSPVGGVLFA LEEVATWWRS ALLWRTFFST
301: ATVVVVLRGF IEVCRGGRCG LFGEGGLIIF DVSDVTVRYR LGDLLLVTLV GVIGGVLGAL YNHVLHMVLR LYNLINDKGR MAKLALALAV CVFTSAGLYV
401: LPFAVPCTPC DPAFGAACPA TGRSGNFKQF NCPAGQYNDL ATLLHATNVD ATRNIFSTGT PGEFRLDSLL IFFAIYCVLG LFTFGIAVPS GLFLPIILMG
501: AAYGRIVALV LQSTVAASID HGLYAVLGAA ALMSGSMRMT VSLCVIFLEL TNNLLLLPMT MFVLLIAKTV GDAFNPSIYE IILDLKGLPF LEPKPEPWMK
601: DLTVGELAAA KPRTISLQVV EKVSTVLEVL KNTGHNGFPV VDRPRPGLSE LHGLVLRSHL VAVLRKRWFL AEKRRTEEWE ARERFSSVEL ADKNCKIDDL
701: ELTPEELEMY IDLHPFTNTT PYTVVETMSV AKAVVLFRSV ALRHMLIMPK YQGPEISPLV GILTRQDLRA HNILGAFPHL AKKSKTH

Best Arabidopsis Sequence Match ( AT3G27170.1 )
(BLAST)

001: MVEEDLNQIG GNSNYNGEGG DPESNTLNQP LVKANRTLSS TPLALVGAKV SHIESLDYEI NENDLFKHDW RKRSKAQVLQ YVFLKWTLAC LVGLFTGLIA
101: TLINLAVENI AGYKLLAVGH FLTQERYVTG LMVLVGANLG LTLVASVLCV CFAPTAAGPG IPEIKAYLNG VDTPNMFGAT TMIVKIVGSI GAVAAGLDLG
201: KEGPLVHIGS CIASLLGQGG TDNHRIKWRW LRYFNNDRDR RDLITCGSAA GVCAAFRSPV GGVLFALEEV ATWWRSALLW RTFFSTAVVV VVLREFIEIC
301: NSGKCGLFGK GGLIMFDVSH VTYTYHVTDI IPVMLIGVIG GILGSLYNHL LHKVLRLYNL INEKGKIHKV LLSLTVSLFT SVCLYGLPFL AKCKPCDPSI
401: DEICPTNGRS GNFKQFHCPK GYYNDLATLL LTTNDDAVRN LFSSNTPNEF GMGSLWIFFV LYCILGLFTF GIATPSGLFL PIILMGAAYG RMLGAAMGSY
501: TSIDQGLYAV LGAAALMAGS MRMTVSLCVI FLELTNNLLL LPITMIVLLI AKTVGDSFNP SIYDIILHLK GLPFLEANPE PWMRNLTVGE LGDAKPPVVT
601: LQGVEKVSNI VDVLKNTTHN AFPVLDEAEV PQVGLATGAT ELHGLILRAH LVKVLKKRWF LTEKRRTEEW EVREKFPWDE LAEREDNFDD VAITSAEMEM
701: YVDLHPLTNT TPYTVMENMS VAKALVLFRQ VGLRHLLIVP KIQASGMCPV VGILTRQDLR AYNILQAFPL LEKSKGGKTH

Arabidopsis Description

CLC-BChloride channel protein [Source:UniProtKB/TrEMBL;Acc:A0A178VKG6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.