Factsheet for PGSC0003DMT400058609

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 7
golgi 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	mitochondrion
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400071510
PGSC0003DMT400073246
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48140.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT1G48140.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT1G48140.1	PGSC0003DMT400073246	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46656	Soybean	plasma membrane	55.28	76.4
CDY43303	Canola	extracellular	54.47	74.44
Bra014103.1-P	Field mustard	plasma membrane	52.85	73.03
GSMUA_Achr6P06900_001	Banana	plasma membrane	52.85	73.03
GSMUA_Achr5P17200_001	Banana	extracellular	52.85	73.03
CDY41856	Canola	plasma membrane	52.03	71.91
EER93370	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	51.22	70.79
CDX77341	Canola	endoplasmic reticulum, extracellular, plasma membrane	51.22	70.79
AT1G48140.1	Thale cress	plasma membrane	51.22	70.79
VIT_07s0005g04260.t01	Wine grape	extracellular	47.15	70.73
TraesCS3B01G115900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	50.41	69.66
TraesCS3D01G099800.1	Wheat	endoplasmic reticulum	50.41	69.66
TraesCS5D01G304200.1	Wheat	endoplasmic reticulum	49.59	68.54
TraesCS5B01G296400.1	Wheat	endoplasmic reticulum	49.59	68.54
TraesCS3A01G099500.1	Wheat	endoplasmic reticulum	49.59	68.54
EES12135	Sorghum	plasma membrane	50.41	67.39
TraesCS5A01G297100.1	Wheat	endoplasmic reticulum	47.15	65.17
KRG99735	Soybean	endoplasmic reticulum, extracellular	37.4	64.79
Solyc01g005110.2.1	Tomato	cytosol	19.51	60.0
Zm00001d034252_P003	Maize	endoplasmic reticulum	49.59	53.98
Bra040366.1-P	Field mustard	extracellular	49.59	52.14
HORVU3Hr1G017960.1	Barley	extracellular	17.89	46.81

Protein Annotations

EntrezGene:102600116	MapMan:18.1.1.2.3	InterPro:DPM3	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005783	GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538
GO:GO:0033185	UniProt:M1C2Z2	PFAM:PF08285	EnsemblPlantsGene:PGSC0003DMG400022770	PGSC:PGSC0003DMG400022770	EnsemblPlants:PGSC0003DMT400058609
PANTHER:PTHR16433	TMHMM:TMhelix	UniParc:UPI0002966E52	:	:	:

Description

Dolichol-phosphate mannosyltransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400022770]

Coordinates

chr1:+:351702..352394

Molecular Weight (calculated)

13809.4 Da

IEP (calculated)

5.050

GRAVY (calculated)

0.615

Length

123 amino acids

Sequence
(BLAST)

001: MKHIVKILAL LLAVTAVWIG LLQTSTIPES YTWLLPLYLI VSLGCYGLLM VGIGLMNFPT CPQEALFLQQ VQLHFSFKKY CIPILLGLFK NVDGLVQDPP
101: EVEEDIVEAR EFLKKKGVDV GFD

Best Arabidopsis Sequence Match ( AT1G48140.1 )
(BLAST)

1: MKHIVKILSL LVAISAFWIG LLQAAIIPRS HTWLLPIYFV VSLGCYGLLM VGVGLMQFPT CPQEAVLLQK DIAEAKDFFK HKGVDVGSN

Arabidopsis Description

DPMS3DPMS3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDH1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.