Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 5
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 6
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G48140.1 | EES05123 | AT1G27300.1 | 21798944 |
| AT1G48140.1 | EES12559 | AT3G60600.1 | 21798944 |
| AT1G48140.1 | EES14570 | AT3G60600.1 | 21798944 |
| AT1G48140.1 | KXG31128 | AT3G60600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES12135 | Sorghum | plasma membrane | 95.51 | 92.39 |
| TraesCS5D01G304200.1 | Wheat | endoplasmic reticulum | 87.64 | 87.64 |
| TraesCS5B01G296400.1 | Wheat | endoplasmic reticulum | 87.64 | 87.64 |
| TraesCS3D01G099800.1 | Wheat | endoplasmic reticulum | 87.64 | 87.64 |
| TraesCS3B01G115900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 87.64 | 87.64 |
| TraesCS3A01G099500.1 | Wheat | endoplasmic reticulum | 85.39 | 85.39 |
| TraesCS5A01G297100.1 | Wheat | endoplasmic reticulum | 84.27 | 84.27 |
| Zm00001d034252_P003 | Maize | endoplasmic reticulum | 96.63 | 76.11 |
| Bra014103.1-P | Field mustard | plasma membrane | 75.28 | 75.28 |
| GSMUA_Achr5P17200_001 | Banana | extracellular | 75.28 | 75.28 |
| VIT_07s0005g04260.t01 | Wine grape | extracellular | 68.54 | 74.39 |
| CDY41856 | Canola | plasma membrane | 74.16 | 74.16 |
| CDX77341 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 73.03 | 73.03 |
| AT1G48140.1 | Thale cress | plasma membrane | 71.91 | 71.91 |
| GSMUA_Achr6P06900_001 | Banana | plasma membrane | 69.66 | 69.66 |
| KRH46656 | Soybean | plasma membrane | 67.42 | 67.42 |
| CDY43303 | Canola | extracellular | 67.42 | 66.67 |
| HORVU3Hr1G017960.1 | Barley | extracellular | 33.71 | 63.83 |
| KRG99735 | Soybean | endoplasmic reticulum, extracellular | 50.56 | 63.38 |
| Solyc01g005110.2.1 | Tomato | cytosol | 24.72 | 55.0 |
| PGSC0003DMT400058609 | Potato | extracellular | 70.79 | 51.22 |
| Bra040366.1-P | Field mustard | extracellular | 64.04 | 48.72 |
Protein Annotations
| MapMan:18.1.1.2.3 | EntrezGene:8083949 | UniProt:C5WZ55 | InterPro:DPM3 | EnsemblPlants:EER93370 | ProteinID:EER93370 |
| ProteinID:EER93370.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004582 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005975 | GO:GO:0006464 |
| GO:GO:0006486 | GO:GO:0006506 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0033185 |
| GO:GO:0035269 | PFAM:PF08285 | PANTHER:PTHR16433 | EnsemblPlantsGene:SORBI_3001G073000 | unigene:Sbi.20515 | TMHMM:TMhelix |
| UniParc:UPI0001A82C47 | RefSeq:XP_002466372.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:5546765..5548122
Molecular Weight (calculated)
9836.4 Da
IEP (calculated)
5.731
GRAVY (calculated)
0.903
Length
89 amino acids
Sequence
(BLAST)
(BLAST)
1: MKHIFKIAAI LVAISAIWIA LLETSTVPRS YTWLLPIYLV VALGCYGLFM VGFGLMFFPT CPQEAVLLQQ DIVEAKEFLA KKGVDVGSE
1: MKHIVKILSL LVAISAFWIG LLQAAIIPRS HTWLLPIYFV VSLGCYGLLM VGVGLMQFPT CPQEAVLLQK DIAEAKDFFK HKGVDVGSN
Arabidopsis Description
DPMS3DPMS3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDH1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.