Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77341 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 88.89 | 89.89 |
| CDY41856 | Canola | plasma membrane | 88.89 | 89.89 |
| AT1G48140.1 | Thale cress | plasma membrane | 88.89 | 89.89 |
| KRH46656 | Soybean | plasma membrane | 72.22 | 73.03 |
| VIT_07s0005g04260.t01 | Wine grape | extracellular | 64.44 | 70.73 |
| EER93370 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 66.67 | 67.42 |
| GSMUA_Achr5P17200_001 | Banana | extracellular | 66.67 | 67.42 |
| TraesCS3A01G099500.1 | Wheat | endoplasmic reticulum | 65.56 | 66.29 |
| KRG99735 | Soybean | endoplasmic reticulum, extracellular | 52.22 | 66.2 |
| TraesCS3B01G115900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 64.44 | 65.17 |
| TraesCS3D01G099800.1 | Wheat | endoplasmic reticulum | 64.44 | 65.17 |
| EES12135 | Sorghum | plasma membrane | 65.56 | 64.13 |
| GSMUA_Achr6P06900_001 | Banana | plasma membrane | 63.33 | 64.04 |
| TraesCS5D01G304200.1 | Wheat | endoplasmic reticulum | 63.33 | 64.04 |
| TraesCS5A01G297100.1 | Wheat | endoplasmic reticulum | 63.33 | 64.04 |
| TraesCS5B01G296400.1 | Wheat | endoplasmic reticulum | 63.33 | 64.04 |
| PGSC0003DMT400058609 | Potato | extracellular | 74.44 | 54.47 |
| Zm00001d034252_P003 | Maize | endoplasmic reticulum | 64.44 | 51.33 |
| Solyc01g005110.2.1 | Tomato | cytosol | 20.0 | 45.0 |
| HORVU3Hr1G017960.1 | Barley | extracellular | 21.11 | 40.43 |
Protein Annotations
| MapMan:18.1.1.2.3 | GO:A0A078I2F1 | UniProt:A0A078I2F1 | EnsemblPlants:CDY43303 | ProteinID:CDY43303 | ProteinID:CDY43303.1 |
| InterPro:DPM3 | GO:GO:0005575 | GO:GO:0005975 | GO:GO:0006464 | GO:GO:0006486 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00076346001 | PFAM:PF08285 | PANTHER:PTHR16433 | SignalP:SignalP-TM | TMHMM:TMhelix | UniPathway:UPA00378 |
| UniParc:UPI0004EE2D28 | : | : | : | : | : |
Description
BnaC06g01650DBnaC06g01650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2F1]
Coordinates
chrLK032551:-:235085..236139
Molecular Weight (calculated)
9900.5 Da
IEP (calculated)
6.773
GRAVY (calculated)
0.777
Length
90 amino acids
Sequence
(BLAST)
(BLAST)
1: MKHIVKILSL LLAVSAFWIG LLQAAIIPPG YNTWLLPIYF VVSLGCYGLL MVGLGLMQFP TCPQEALLLQ HDIAEAKDFF KHKGVDVGSD
1: MKHIVKILSL LVAISAFWIG LLQAAIIPRS HTWLLPIYFV VSLGCYGLLM VGVGLMQFPT CPQEAVLLQK DIAEAKDFFK HKGVDVGSN
Arabidopsis Description
DPMS3DPMS3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDH1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.