Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 7
- golgi 6
- mitochondrion 1
- plastid 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr6P06900_001 | Banana | plasma membrane | 85.39 | 85.39 |
EER93370 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 75.28 | 75.28 |
VIT_07s0005g04260.t01 | Wine grape | extracellular | 67.42 | 73.17 |
Bra014103.1-P | Field mustard | plasma membrane | 70.79 | 70.79 |
TraesCS3D01G099800.1 | Wheat | endoplasmic reticulum | 70.79 | 70.79 |
TraesCS3B01G115900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 70.79 | 70.79 |
AT1G48140.1 | Thale cress | plasma membrane | 70.79 | 70.79 |
EES12135 | Sorghum | plasma membrane | 73.03 | 70.65 |
KRH46656 | Soybean | plasma membrane | 69.66 | 69.66 |
TraesCS5D01G304200.1 | Wheat | endoplasmic reticulum | 69.66 | 69.66 |
TraesCS5B01G296400.1 | Wheat | endoplasmic reticulum | 69.66 | 69.66 |
TraesCS3A01G099500.1 | Wheat | endoplasmic reticulum | 69.66 | 69.66 |
CDY41856 | Canola | plasma membrane | 69.66 | 69.66 |
CDX77341 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 68.54 | 68.54 |
TraesCS5A01G297100.1 | Wheat | endoplasmic reticulum | 67.42 | 67.42 |
CDY43303 | Canola | extracellular | 67.42 | 66.67 |
KRG99735 | Soybean | endoplasmic reticulum, extracellular | 51.69 | 64.79 |
Zm00001d034252_P003 | Maize | endoplasmic reticulum | 75.28 | 59.29 |
PGSC0003DMT400058609 | Potato | extracellular | 73.03 | 52.85 |
HORVU3Hr1G017960.1 | Barley | extracellular | 26.97 | 51.06 |
Bra040366.1-P | Field mustard | extracellular | 64.04 | 48.72 |
Solyc01g005110.2.1 | Tomato | cytosol | 17.98 | 40.0 |
Protein Annotations
EnsemblPlants:GSMUA_Achr5P17200_001 | EnsemblPlants:GSMUA_Achr5T17200_001 | EnsemblPlantsGene:GSMUA_Achr5G17200_001 | GO:GO:0005575 | GO:GO:0005975 | GO:GO:0006464 |
GO:GO:0006486 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 |
GO:GO:0016021 | GO:GO:0019538 | InterPro:DPM3 | PANTHER:PTHR16433 | PFAM:PF08285 | SEG:seg |
TMHMM:TMhelix | UniParc:UPI00029686A9 | UniProt:M0SZ99 | MapMan:18.1.1.2.3 | : | : |
Description
Conserved hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G17200_001]
Coordinates
chr5:-:16116376..16118928
Molecular Weight (calculated)
9748.4 Da
IEP (calculated)
7.251
GRAVY (calculated)
0.876
Length
89 amino acids
Sequence
(BLAST)
(BLAST)
1: MKHILKIMAL LVAVAGIWIS LLETSVVPRS YTWLLPVYLV VSLGCYGLLM VGVGLMLFPT CPQEASLLQK DIIEAKEFLK SRGVDVGAE
1: MKHIVKILSL LVAISAFWIG LLQAAIIPRS HTWLLPIYFV VSLGCYGLLM VGVGLMQFPT CPQEAVLLQK DIAEAKDFFK HKGVDVGSN
Arabidopsis Description
DPMS3DPMS3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDH1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.