Factsheet for VIT_07s0005g04260.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_10s0003g01830.t01
VIT_15s0048g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48140.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT1G48140.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT1G48140.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46656	Soybean	plasma membrane	74.39	68.54
EER93370	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	74.39	68.54
Bra014103.1-P	Field mustard	plasma membrane	73.17	67.42
AT1G48140.1	Thale cress	plasma membrane	73.17	67.42
GSMUA_Achr5P17200_001	Banana	extracellular	73.17	67.42
CDY41856	Canola	plasma membrane	71.95	66.29
CDX77341	Canola	endoplasmic reticulum, extracellular, plasma membrane	70.73	65.17
KRG99735	Soybean	endoplasmic reticulum, extracellular	56.1	64.79
CDY43303	Canola	extracellular	70.73	64.44
EES12135	Sorghum	plasma membrane	71.95	64.13
TraesCS3A01G099500.1	Wheat	endoplasmic reticulum	69.51	64.04
TraesCS3B01G115900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	69.51	64.04
TraesCS3D01G099800.1	Wheat	endoplasmic reticulum	69.51	64.04
GSMUA_Achr6P06900_001	Banana	plasma membrane	68.29	62.92
TraesCS5B01G296400.1	Wheat	endoplasmic reticulum	68.29	62.92
TraesCS5D01G304200.1	Wheat	endoplasmic reticulum	68.29	62.92
TraesCS5A01G297100.1	Wheat	endoplasmic reticulum	65.85	60.67
Solyc01g005110.2.1	Tomato	cytosol	25.61	52.5
Zm00001d034252_P003	Maize	endoplasmic reticulum	71.95	52.21
PGSC0003DMT400058609	Potato	extracellular	70.73	47.15
Bra040366.1-P	Field mustard	extracellular	67.07	47.01
HORVU3Hr1G017960.1	Barley	extracellular	17.07	29.79

Protein Annotations

EntrezGene:100232877	wikigene:100232877	MapMan:18.1.1.2.3	ProteinID:AAP30738	ProteinID:AAP30738.1	EMBL:AF501623
ProteinID:CCB60171	ProteinID:CCB60171.1	InterPro:DPM3	UniProt:F6HZQ5	EMBL:FN596502	GO:GO:0003674
GO:GO:0003824	GO:GO:0004582	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005789	GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0006506
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0019538	GO:GO:0033185	GO:GO:0035269	EntrezGene:LOC100232877
wikigene:LOC100232877	PFAM:PF08285	PANTHER:PTHR16433	SignalP:SignalP-TM	TIGR:TC53359	TMHMM:TMhelix
UniParc:UPI000210A2C2	ArrayExpress:VIT_07s0005g04260	EnsemblPlantsGene:VIT_07s0005g04260	EnsemblPlants:VIT_07s0005g04260.t01	unigene:Vvi.130	RefSeq:XP_002272906
RefSeq:XP_002272906.1	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:7371034..7379093

Molecular Weight (calculated)

8824.2 Da

IEP (calculated)

4.265

GRAVY (calculated)

0.902

Length

82 amino acids

Sequence
(BLAST)

1: MALLVAIAAL WIGLLQTSMI PQSYALLLPI YSVVTLGCYG LLMVGVGLMQ FPTCPQEALL LQQDIIEAKE FLQRKGVDVG SG

Best Arabidopsis Sequence Match ( AT1G48140.1 )
(BLAST)

1: MKHIVKILSL LVAISAFWIG LLQAAIIPRS HTWLLPIYFV VSLGCYGLLM VGVGLMQFPT CPQEAVLLQK DIAEAKDFFK HKGVDVGSN

Arabidopsis Description

DPMS3DPMS3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDH1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.