Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 2
- plastid 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g071920.2.1 | |
| Solyc03g005980.2.1 | |
| Solyc05g015640.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G48140.1 | Solyc05g015640.2.1 | AT1G27300.1 | 21798944 |
| AT1G48140.1 | Solyc02g071920.2.1 | AT4G19030.1 | 21798944 |
| AT1G48140.1 | Solyc03g005980.2.1 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G099800.1 | Wheat | endoplasmic reticulum | 60.0 | 26.97 |
| TraesCS3B01G115900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 60.0 | 26.97 |
| TraesCS5D01G304200.1 | Wheat | endoplasmic reticulum | 57.5 | 25.84 |
| TraesCS5B01G296400.1 | Wheat | endoplasmic reticulum | 57.5 | 25.84 |
| VIT_07s0005g04260.t01 | Wine grape | extracellular | 52.5 | 25.61 |
| EER93370 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 55.0 | 24.72 |
| TraesCS3A01G099500.1 | Wheat | endoplasmic reticulum | 55.0 | 24.72 |
| EES12135 | Sorghum | plasma membrane | 55.0 | 23.91 |
| TraesCS5A01G297100.1 | Wheat | endoplasmic reticulum | 52.5 | 23.6 |
| Bra014103.1-P | Field mustard | plasma membrane | 47.5 | 21.35 |
| CDX77341 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 47.5 | 21.35 |
| CDY41856 | Canola | plasma membrane | 47.5 | 21.35 |
| KRH46656 | Soybean | plasma membrane | 47.5 | 21.35 |
| GSMUA_Achr6P06900_001 | Banana | plasma membrane | 45.0 | 20.22 |
| CDY43303 | Canola | extracellular | 45.0 | 20.0 |
| KRG99735 | Soybean | endoplasmic reticulum, extracellular | 35.0 | 19.72 |
| PGSC0003DMT400058609 | Potato | extracellular | 60.0 | 19.51 |
| AT1G48140.1 | Thale cress | plasma membrane | 42.5 | 19.1 |
| Zm00001d034252_P003 | Maize | endoplasmic reticulum | 52.5 | 18.58 |
| GSMUA_Achr5P17200_001 | Banana | extracellular | 40.0 | 17.98 |
| Bra040366.1-P | Field mustard | extracellular | 35.0 | 11.97 |
| HORVU3Hr1G017960.1 | Barley | extracellular | 12.5 | 10.64 |
Protein Annotations
| MapMan:18.1.1.2.3 | InterPro:DPM3 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004582 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 | GO:GO:0005975 |
| GO:GO:0006464 | GO:GO:0006486 | GO:GO:0006506 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0033185 |
| GO:GO:0035269 | UniProt:K4AS78 | PFAM:PF08285 | EnsemblPlantsGene:Solyc01g005110.2 | EnsemblPlants:Solyc01g005110.2.1 | UniParc:UPI00027618D7 |
Description
No Description!
Coordinates
chr1:+:102188..103191
Molecular Weight (calculated)
4411.4 Da
IEP (calculated)
4.355
GRAVY (calculated)
0.037
Length
40 amino acids
Sequence
(BLAST)
(BLAST)
1: MVGVGLMNFP TCPQEALFLQ QDIVEAREFL KKKGVDVGSD
1: MKHIVKILSL LVAISAFWIG LLQAAIIPRS HTWLLPIYFV VSLGCYGLLM VGVGLMQFPT CPQEAVLLQK DIAEAKDFFK HKGVDVGSN
Arabidopsis Description
DPMS3DPMS3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDH1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.