Subcellular Localization
min:
: max
Winner_takes_all: extracellular, plasma membrane, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- golgi 4
- plasma membrane 5
- endoplasmic reticulum 5
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY41856 | Canola | plasma membrane | 96.63 | 96.63 |
| AT1G48140.1 | Thale cress | plasma membrane | 94.38 | 94.38 |
| CDY43303 | Canola | extracellular | 89.89 | 88.89 |
| EER93370 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 73.03 | 73.03 |
| KRH46656 | Soybean | plasma membrane | 73.03 | 73.03 |
| VIT_07s0005g04260.t01 | Wine grape | extracellular | 65.17 | 70.73 |
| TraesCS5B01G296400.1 | Wheat | endoplasmic reticulum | 69.66 | 69.66 |
| TraesCS5A01G297100.1 | Wheat | endoplasmic reticulum | 69.66 | 69.66 |
| TraesCS5D01G304200.1 | Wheat | endoplasmic reticulum | 69.66 | 69.66 |
| GSMUA_Achr5P17200_001 | Banana | extracellular | 68.54 | 68.54 |
| TraesCS3A01G099500.1 | Wheat | endoplasmic reticulum | 68.54 | 68.54 |
| TraesCS3B01G115900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 68.54 | 68.54 |
| TraesCS3D01G099800.1 | Wheat | endoplasmic reticulum | 68.54 | 68.54 |
| EES12135 | Sorghum | plasma membrane | 70.79 | 68.48 |
| GSMUA_Achr6P06900_001 | Banana | plasma membrane | 67.42 | 67.42 |
| KRG99735 | Soybean | endoplasmic reticulum, extracellular | 52.81 | 66.2 |
| Zm00001d034252_P003 | Maize | endoplasmic reticulum | 70.79 | 55.75 |
| PGSC0003DMT400058609 | Potato | extracellular | 70.79 | 51.22 |
| Solyc01g005110.2.1 | Tomato | cytosol | 21.35 | 47.5 |
| HORVU3Hr1G017960.1 | Barley | extracellular | 23.6 | 44.68 |
Protein Annotations
| MapMan:18.1.1.2.3 | GO:A0A078CJG9 | EnsemblPlants:CDX77341 | ProteinID:CDX77341 | ProteinID:CDX77341.1 | InterPro:DPM3 |
| GO:GO:0005975 | GO:GO:0006464 | GO:GO:0006486 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00128125001 | PFAM:PF08285 | PANTHER:PTHR16433 | TMHMM:TMhelix |
| UniPathway:UPA00378 | UniParc:UPI0004EE9ACC | : | : | : | : |
Description
BnaC08g03860D
Coordinates
chrLK031810:-:1708152..1709457
Molecular Weight (calculated)
9826.4 Da
IEP (calculated)
7.510
GRAVY (calculated)
0.781
Length
89 amino acids
Sequence
(BLAST)
(BLAST)
1: MKHIVKILSL LVAISAFWIG LLQAAIVPRT HTWLLPIYFV VSLGCYGLLM VGIGLMQFPT CPQEAVLLQQ DIAEAKDFFK HKGVDVGSD
1: MKHIVKILSL LVAISAFWIG LLQAAIIPRS HTWLLPIYFV VSLGCYGLLM VGVGLMQFPT CPQEAVLLQK DIAEAKDFFK HKGVDVGSN
Arabidopsis Description
DPMS3DPMS3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDH1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.