CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 2
cytosol 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 7
golgi 5
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	golgi, mitochondrion, nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05123
EES12559
EES14570
KXG31128

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G48140.1	EES05123	AT1G27300.1	21798944
AT1G48140.1	EES12559	AT3G60600.1	21798944
AT1G48140.1	EES14570	AT3G60600.1	21798944
AT1G48140.1	KXG31128	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93370	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	92.39	95.51
TraesCS5D01G304200.1	Wheat	endoplasmic reticulum	82.61	85.39
TraesCS5B01G296400.1	Wheat	endoplasmic reticulum	82.61	85.39
TraesCS3D01G099800.1	Wheat	endoplasmic reticulum	82.61	85.39
TraesCS3B01G115900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	82.61	85.39
TraesCS3A01G099500.1	Wheat	endoplasmic reticulum	80.43	83.15
TraesCS5A01G297100.1	Wheat	endoplasmic reticulum	79.35	82.02
Bra014103.1-P	Field mustard	plasma membrane	70.65	73.03
GSMUA_Achr5P17200_001	Banana	extracellular	70.65	73.03
Zm00001d034252_P003	Maize	endoplasmic reticulum	89.13	72.57
VIT_07s0005g04260.t01	Wine grape	extracellular	64.13	71.95
CDY41856	Canola	plasma membrane	69.57	71.91
CDX77341	Canola	endoplasmic reticulum, extracellular, plasma membrane	68.48	70.79
AT1G48140.1	Thale cress	plasma membrane	67.39	69.66
GSMUA_Achr6P06900_001	Banana	plasma membrane	66.3	68.54
KRH46656	Soybean	plasma membrane	64.13	66.29
CDY43303	Canola	extracellular	64.13	65.56
HORVU3Hr1G017960.1	Barley	extracellular	32.61	63.83
KRG99735	Soybean	endoplasmic reticulum, extracellular	47.83	61.97
Solyc01g005110.2.1	Tomato	cytosol	23.91	55.0
PGSC0003DMT400058609	Potato	extracellular	67.39	50.41
Bra040366.1-P	Field mustard	extracellular	59.78	47.01

Protein Annotations

MapMan:18.1.1.2.3	EntrezGene:8072999	UniProt:C5YG95	InterPro:DPM3	EnsemblPlants:EES12135	ProteinID:EES12135
ProteinID:EES12135.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004582	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0005975	GO:GO:0006464
GO:GO:0006486	GO:GO:0006506	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0019538	GO:GO:0033185
GO:GO:0035269	PFAM:PF08285	PANTHER:PTHR16433	EnsemblPlantsGene:SORBI_3006G074000	TMHMM:TMhelix	UniParc:UPI0001A87065
RefSeq:XP_002447807.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:43636555..43638337

Molecular Weight (calculated)

10043.7 Da

IEP (calculated)

7.250

GRAVY (calculated)

1.002

Length

92 amino acids

Sequence
(BLAST)

1: MKHIFKIAAI LIAISAIWIA LLETSTVPRS YTWLLPIYLV VALGCYGLFM VGFGLMLFPS CPQEAVLLQQ DIVEAKEFLA KKGVDVGSIL SG

Best Arabidopsis Sequence Match ( AT1G48140.1 )
(BLAST)

1: MKHIVKILSL LVAISAFWIG LLQAAIIPRS HTWLLPIYFV VSLGCYGLLM VGVGLMQFPT CPQEAVLLQK DIAEAKDFFK HKGVDVGSN

Arabidopsis Description

DPMS3DPMS3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDH1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.