Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 5
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G304200.1 | Wheat | endoplasmic reticulum | 100.0 | 100.0 |
| TraesCS5A01G297100.1 | Wheat | endoplasmic reticulum | 96.63 | 96.63 |
| TraesCS3B01G115900.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 95.51 | 95.51 |
| EER93370 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 87.64 | 87.64 |
| EES12135 | Sorghum | plasma membrane | 85.39 | 82.61 |
| Bra014103.1-P | Field mustard | plasma membrane | 70.79 | 70.79 |
| CDX77341 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 69.66 | 69.66 |
| CDY41856 | Canola | plasma membrane | 69.66 | 69.66 |
| GSMUA_Achr5P17200_001 | Banana | extracellular | 69.66 | 69.66 |
| Zm00001d034252_P003 | Maize | endoplasmic reticulum | 87.64 | 69.03 |
| KRH46656 | Soybean | plasma membrane | 68.54 | 68.54 |
| VIT_07s0005g04260.t01 | Wine grape | extracellular | 62.92 | 68.29 |
| HORVU3Hr1G017960.1 | Barley | extracellular | 35.96 | 68.09 |
| GSMUA_Achr6P06900_001 | Banana | plasma membrane | 67.42 | 67.42 |
| AT1G48140.1 | Thale cress | plasma membrane | 67.42 | 67.42 |
| KRG99735 | Soybean | endoplasmic reticulum, extracellular | 50.56 | 63.38 |
| CDY43303 | Canola | extracellular | 64.04 | 63.33 |
| Solyc01g005110.2.1 | Tomato | cytosol | 25.84 | 57.5 |
| PGSC0003DMT400058609 | Potato | extracellular | 68.54 | 49.59 |
| Bra040366.1-P | Field mustard | extracellular | 61.8 | 47.01 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G296400.1 | EnsemblPlantsGene:TraesCS5B01G296400 | GO:GO:0005975 | GO:GO:0006464 | GO:GO:0006486 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:DPM3 | PANTHER:PTHR16433 |
| PFAM:PF08285 | TMHMM:TMhelix | MapMan:18.1.1.2.3 | : | : | : |
Description
No Description!
Coordinates
chr5B:+:479715026..479715770
Molecular Weight (calculated)
9868.3 Da
IEP (calculated)
5.718
GRAVY (calculated)
0.856
Length
89 amino acids
Sequence
(BLAST)
(BLAST)
1: MKHIFKIIAV LAAISAVWVA LLETSTVPRS FTWLLPIYLV VALGCYGLFM VGYGLMFFPT CPQEAVLLQQ DIVEAKEFLS KRGVDVSSD
1: MKHIVKILSL LVAISAFWIG LLQAAIIPRS HTWLLPIYFV VSLGCYGLLM VGVGLMQFPT CPQEAVLLQK DIAEAKDFFK HKGVDVGSN
Arabidopsis Description
DPMS3DPMS3 [Source:UniProtKB/TrEMBL;Acc:A0A178WDH1]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.