Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- cytosol 2
- plasma membrane 2
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400071510 | |
| PGSC0003DMT400073246 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G09085.1 | PGSC0003DMT400071510 | AT4G19030.1 | 21798944 |
| AT3G09085.1 | PGSC0003DMT400073246 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g013140.1.1 | Tomato | cytosol | 91.07 | 95.33 |
| VIT_08s0007g01800.t01 | Wine grape | cytosol | 45.54 | 78.46 |
| KRH49272 | Soybean | endoplasmic reticulum | 79.46 | 76.72 |
| KRH75815 | Soybean | endoplasmic reticulum, extracellular, nucleus | 70.54 | 70.54 |
| KRH66020 | Soybean | endoplasmic reticulum, nucleus, plasma membrane, plastid | 70.54 | 70.54 |
| AT3G09085.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 69.64 | 69.64 |
| Bra034053.1-P | Field mustard | endoplasmic reticulum, nucleus, plasma membrane | 68.75 | 68.75 |
| CDY67522 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 68.75 | 68.75 |
| CDY67515 | Canola | endoplasmic reticulum | 67.86 | 67.86 |
| GSMUA_Achr6P33580_001 | Banana | mitochondrion | 66.96 | 66.37 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 63.39 | 64.55 |
| TraesCS4A01G091600.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 57.14 | 55.65 |
| TraesCS4D01G213900.1 | Wheat | cytosol, golgi, plasma membrane | 58.04 | 53.72 |
| Os03t0265800-01 | Rice | endoplasmic reticulum, mitochondrion, plasma membrane | 53.57 | 51.72 |
| Zm00001d028547_P001 | Maize | endoplasmic reticulum, golgi, plasma membrane | 57.14 | 47.41 |
| KXG39720 | Sorghum | cytosol, golgi, peroxisome | 54.46 | 46.21 |
| KRH00155 | Soybean | plastid | 79.46 | 38.2 |
| TraesCS4B01G213100.1 | Wheat | mitochondrion | 57.14 | 35.75 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400052348 | EnsemblPlantsGene:PGSC0003DMG400020322 | EntrezGene:102580932 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF962 | PANTHER:PTHR34205 | PANTHER:PTHR34205:SF2 | PFAM:PF06127 | PGSC:PGSC0003DMG400020322 | RefSeq:XP_006363063.1 |
| RefSeq:XP_006363064.1 | TMHMM:TMhelix | UniParc:UPI0002964543 | UniProt:M1BT83 | MapMan:35.2 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400020322]
Coordinates
chr9:+:495708..498130
Molecular Weight (calculated)
13376.6 Da
IEP (calculated)
9.483
GRAVY (calculated)
0.207
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFRSMEEFW PYYMNHHSKP ATRRWHFVGT LCSILCLVYT VLFNKWFVIL VPILGYGLAW YSHFFVEGNV PATFGHPFWS LLCDFKMFGL MLTGQMDREI
101: KRLGKRPVLQ VY
101: KRLGKRPVLQ VY
001: MNFRSFEEFW PFYMMQHSNP STRRLHFIGI IASIVALICS ILINWWFLAL VPLLGYGFAW YSHFFVEGNV PASFGHPLWS FLCDLKMFSL MLTGSMEREM
101: KRLGKRPLLQ LS
101: KRLGKRPLLQ LS
Arabidopsis Description
At3g09085 [Source:UniProtKB/TrEMBL;Acc:Q8LDK7]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.