Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 2
- extracellular 1
- golgi 1
- plasma membrane 2
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G213900.1 | Wheat | cytosol, golgi, plasma membrane | 97.39 | 92.56 |
| Os03t0265800-01 | Rice | endoplasmic reticulum, mitochondrion, plasma membrane | 80.0 | 79.31 |
| KXG39720 | Sorghum | cytosol, golgi, peroxisome | 80.87 | 70.45 |
| Zm00001d028547_P001 | Maize | endoplasmic reticulum, golgi, plasma membrane | 81.74 | 69.63 |
| TraesCS4B01G213100.1 | Wheat | mitochondrion | 97.39 | 62.57 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 58.26 | 60.91 |
| GSMUA_Achr6P33580_001 | Banana | mitochondrion | 58.26 | 59.29 |
| Solyc09g013140.1.1 | Tomato | cytosol | 53.91 | 57.94 |
| PGSC0003DMT400052348 | Potato | cytosol | 55.65 | 57.14 |
| Bra034053.1-P | Field mustard | endoplasmic reticulum, nucleus, plasma membrane | 54.78 | 56.25 |
| CDY67522 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 54.78 | 56.25 |
| CDY67515 | Canola | endoplasmic reticulum | 53.04 | 54.46 |
| AT3G09085.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 53.04 | 54.46 |
| VIT_08s0007g01800.t01 | Wine grape | cytosol | 30.43 | 53.85 |
| KRH49272 | Soybean | endoplasmic reticulum | 53.91 | 53.45 |
| KRH75815 | Soybean | endoplasmic reticulum, extracellular, nucleus | 46.96 | 48.21 |
| KRH66020 | Soybean | endoplasmic reticulum, nucleus, plasma membrane, plastid | 46.96 | 48.21 |
| KRH00155 | Soybean | plastid | 54.78 | 27.04 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G091600.1 | EnsemblPlantsGene:TraesCS4A01G091600 | InterPro:DUF962 | PANTHER:PTHR34205 | PANTHER:PTHR34205:SF2 | PFAM:PF06127 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr4A:+:98558788..98559135
Molecular Weight (calculated)
12839.6 Da
IEP (calculated)
8.878
GRAVY (calculated)
0.241
Length
115 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKEFGSMEE FWGFYLGQHS KPATRRWHFA GTLASLVCAL LAAATGRAAL LVACPVLGYG MAWYSHFFVE GNRPATFGHP VWSFLCDYRM FALILTGRID
101: AELARLRVHP RLASD
101: AELARLRVHP RLASD
001: MNFRSFEEFW PFYMMQHSNP STRRLHFIGI IASIVALICS ILINWWFLAL VPLLGYGFAW YSHFFVEGNV PASFGHPLWS FLCDLKMFSL MLTGSMEREM
101: KRLGKRPLLQ LS
101: KRLGKRPLLQ LS
Arabidopsis Description
At3g09085 [Source:UniProtKB/TrEMBL;Acc:Q8LDK7]
SUBAcon: [cytosol,plasma membrane,endoplasmic reticulum]
SUBAcon: [cytosol,plasma membrane,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.