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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:
  • plastid 1
  • mitochondrion 1
  • endoplasmic reticulum 2
  • extracellular 1
  • vacuole 1
  • plasma membrane 2
  • golgi 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, plasma membrane
Any Predictor:cytosol, endoplasmic reticulum, mitochondrion, plasma membrane, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY67522 Canola endoplasmic reticulum, nucleus, plasma membrane 89.29 89.29
Bra034053.1-P Field mustard endoplasmic reticulum, nucleus, plasma membrane 89.29 89.29
CDY67515 Canola endoplasmic reticulum 87.5 87.5
PGSC0003DMT400052348 Potato cytosol 69.64 69.64
Solyc09g013140.1.1 Tomato cytosol 65.18 68.22
KRH49272 Soybean endoplasmic reticulum 70.54 68.1
GSMUA_Achr11P... Banana cytosol, endoplasmic reticulum, mitochondrion, plasma membrane 65.18 66.36
VIT_08s0007g01800.t01 Wine grape cytosol 37.5 64.62
KRH75815 Soybean endoplasmic reticulum, extracellular, nucleus 63.39 63.39
GSMUA_Achr6P33580_001 Banana mitochondrion 63.39 62.83
KRH66020 Soybean endoplasmic reticulum, nucleus, plasma membrane, plastid 62.5 62.5
TraesCS4A01G091600.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 54.46 53.04
Os03t0265800-01 Rice endoplasmic reticulum, mitochondrion, plasma membrane 51.79 50.0
TraesCS4D01G213900.1 Wheat cytosol, golgi, plasma membrane 53.57 49.59
Zm00001d028547_P001 Maize endoplasmic reticulum, golgi, plasma membrane 53.57 44.44
KXG39720 Sorghum cytosol, golgi, peroxisome 50.89 43.18
KRH00155 Soybean plastid 72.32 34.76
TraesCS4B01G213100.1 Wheat mitochondrion 53.57 33.52
Protein Annotations
MapMan:35.2EntrezGene:820062UniProt:A0A178VPW7ProteinID:AEE74718.1ArrayExpress:AT3G09085EnsemblPlantsGene:AT3G09085
RefSeq:AT3G09085TAIR:AT3G09085RefSeq:AT3G09085-TAIR-GEnsemblPlants:AT3G09085.1TAIR:AT3G09085.1EMBL:AY085953
Unigene:At.69661EMBL:BT002388EMBL:BT006520InterPro:DUF962GO:GO:0005575GO:GO:0008150
GO:GO:0016020GO:GO:0016021RefSeq:NP_566342.1ProteinID:OAP06902.1PFAM:PF06127PO:PO:0000013
PO:PO:0000037PO:PO:0000230PO:PO:0000293PO:PO:0001016PO:PO:0001017PO:PO:0001054
PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095
PO:PO:0007098PO:PO:0007103PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025195PO:PO:0025281PANTHER:PTHR34205PANTHER:PTHR34205:SF2UniProt:Q8LDK7TMHMM:TMhelix
UniParc:UPI00000AC581:::::
Description
At3g09085 [Source:UniProtKB/TrEMBL;Acc:Q8LDK7]
Coordinates
chr3:+:2782133..2782740
Molecular Weight (calculated)
13170.4 Da
IEP (calculated)
9.269
GRAVY (calculated)
0.406
Length
112 amino acids
Sequence
(BLAST)
001: MNFRSFEEFW PFYMMQHSNP STRRLHFIGI IASIVALICS ILINWWFLAL VPLLGYGFAW YSHFFVEGNV PASFGHPLWS FLCDLKMFSL MLTGSMEREM
101: KRLGKRPLLQ LS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.