Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- endoplasmic reticulum 2
- plasma membrane 3
- extracellular 1
- golgi 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P10230_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G09085.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 78.76 | 80.91 |
| Solyc09g013140.1.1 | Tomato | cytosol | 63.72 | 67.29 |
| PGSC0003DMT400052348 | Potato | cytosol | 66.37 | 66.96 |
| KRH49272 | Soybean | endoplasmic reticulum | 67.26 | 65.52 |
| Bra034053.1-P | Field mustard | endoplasmic reticulum, nucleus, plasma membrane | 62.83 | 63.39 |
| CDY67522 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 62.83 | 63.39 |
| AT3G09085.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 62.83 | 63.39 |
| KRH75815 | Soybean | endoplasmic reticulum, extracellular, nucleus | 62.83 | 63.39 |
| CDY67515 | Canola | endoplasmic reticulum | 61.95 | 62.5 |
| KRH66020 | Soybean | endoplasmic reticulum, nucleus, plasma membrane, plastid | 61.95 | 62.5 |
| VIT_08s0007g01800.t01 | Wine grape | cytosol | 35.4 | 61.54 |
| Os03t0265800-01 | Rice | endoplasmic reticulum, mitochondrion, plasma membrane | 61.95 | 60.34 |
| TraesCS4A01G091600.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 59.29 | 58.26 |
| TraesCS4D01G213900.1 | Wheat | cytosol, golgi, plasma membrane | 58.41 | 54.55 |
| Zm00001d028547_P001 | Maize | endoplasmic reticulum, golgi, plasma membrane | 59.29 | 49.63 |
| KXG39720 | Sorghum | cytosol, golgi, peroxisome | 57.52 | 49.24 |
| TraesCS4B01G213100.1 | Wheat | mitochondrion | 60.18 | 37.99 |
| KRH00155 | Soybean | plastid | 67.26 | 32.62 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P33580_001 | EnsemblPlants:GSMUA_Achr6T33580_001 | EnsemblPlantsGene:GSMUA_Achr6G33580_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF962 | PANTHER:PTHR34205 | PANTHER:PTHR34205:SF2 | PFAM:PF06127 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000295A041 | UniProt:M0TCF1 | MapMan:35.2 | : | : | : |
Description
membrane protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G33580_001]
Coordinates
chr6:-:32575185..32575526
Molecular Weight (calculated)
13095.2 Da
IEP (calculated)
9.736
GRAVY (calculated)
0.366
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MNCRSLEEFW AFYVNQHSKP ATRRWHFAGT LSAFLCLLLA LLLGRWPFLL AAPLLGYGLG WYSHFFVESN APAAFVHPLW SFLCDLKMFV LMLTGQMDRE
101: IKRLGKRPVL QAF
101: IKRLGKRPVL QAF
001: MNFRSFEEFW PFYMMQHSNP STRRLHFIGI IASIVALICS ILINWWFLAL VPLLGYGFAW YSHFFVEGNV PASFGHPLWS FLCDLKMFSL MLTGSMEREM
101: KRLGKRPLLQ LS
101: KRLGKRPLLQ LS
Arabidopsis Description
At3g09085 [Source:UniProtKB/TrEMBL;Acc:Q8LDK7]
SUBAcon: [cytosol,plasma membrane,endoplasmic reticulum]
SUBAcon: [cytosol,plasma membrane,endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.