Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G091600.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 92.56 | 97.39 |
| Os03t0265800-01 | Rice | endoplasmic reticulum, mitochondrion, plasma membrane | 75.21 | 78.45 |
| KXG39720 | Sorghum | cytosol, golgi, peroxisome | 77.69 | 71.21 |
| Zm00001d028547_P001 | Maize | endoplasmic reticulum, golgi, plasma membrane | 76.86 | 68.89 |
| TraesCS4B01G213100.1 | Wheat | mitochondrion | 91.74 | 62.01 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 54.55 | 60.0 |
| Solyc09g013140.1.1 | Tomato | cytosol | 52.07 | 58.88 |
| GSMUA_Achr6P33580_001 | Banana | mitochondrion | 54.55 | 58.41 |
| PGSC0003DMT400052348 | Potato | cytosol | 53.72 | 58.04 |
| VIT_08s0007g01800.t01 | Wine grape | cytosol | 29.75 | 55.38 |
| Bra034053.1-P | Field mustard | endoplasmic reticulum, nucleus, plasma membrane | 51.24 | 55.36 |
| CDY67522 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 51.24 | 55.36 |
| KRH49272 | Soybean | endoplasmic reticulum | 52.07 | 54.31 |
| CDY67515 | Canola | endoplasmic reticulum | 49.59 | 53.57 |
| AT3G09085.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 49.59 | 53.57 |
| KRH75815 | Soybean | endoplasmic reticulum, extracellular, nucleus | 45.45 | 49.11 |
| KRH66020 | Soybean | endoplasmic reticulum, nucleus, plasma membrane, plastid | 45.45 | 49.11 |
| KRH00155 | Soybean | plastid | 52.89 | 27.47 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G213900.1 | EnsemblPlantsGene:TraesCS4D01G213900 | InterPro:DUF962 | PANTHER:PTHR34205 | PANTHER:PTHR34205:SF2 | PFAM:PF06127 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr4D:-:366691812..366692177
Molecular Weight (calculated)
13275.2 Da
IEP (calculated)
9.287
GRAVY (calculated)
0.204
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGGARGKE FGSMEEFWGF YLGQHSKPAT RRWHFAGTLA SLVCALLAAA TGRAALLVAC PVLGYGMAWY SHFFVEGNRP ATFGHPVWSL LCDYRMFALI
101: LTGRIDAELA RLRIHPRLAS D
101: LTGRIDAELA RLRIHPRLAS D
001: MNFRSFEEFW PFYMMQHSNP STRRLHFIGI IASIVALICS ILINWWFLAL VPLLGYGFAW YSHFFVEGNV PASFGHPLWS FLCDLKMFSL MLTGSMEREM
101: KRLGKRPLLQ LS
101: KRLGKRPLLQ LS
Arabidopsis Description
At3g09085 [Source:UniProtKB/TrEMBL;Acc:Q8LDK7]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.