Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- endoplasmic reticulum 2
- plasma membrane 2
- extracellular 2
- vacuole 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH66020 | Soybean | endoplasmic reticulum, nucleus, plasma membrane, plastid | 97.32 | 97.32 |
| KRH49272 | Soybean | endoplasmic reticulum | 79.46 | 76.72 |
| PGSC0003DMT400052348 | Potato | cytosol | 70.54 | 70.54 |
| Solyc09g013140.1.1 | Tomato | cytosol | 66.96 | 70.09 |
| VIT_08s0007g01800.t01 | Wine grape | cytosol | 37.5 | 64.62 |
| Bra034053.1-P | Field mustard | endoplasmic reticulum, nucleus, plasma membrane | 64.29 | 64.29 |
| CDY67522 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 64.29 | 64.29 |
| CDY67515 | Canola | endoplasmic reticulum | 63.39 | 63.39 |
| AT3G09085.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 63.39 | 63.39 |
| GSMUA_Achr6P33580_001 | Banana | mitochondrion | 63.39 | 62.83 |
| GSMUA_Achr11P... | Banana | cytosol, endoplasmic reticulum, mitochondrion, plasma membrane | 61.61 | 62.73 |
| TraesCS4A01G091600.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 48.21 | 46.96 |
| TraesCS4D01G213900.1 | Wheat | cytosol, golgi, plasma membrane | 49.11 | 45.45 |
| Os03t0265800-01 | Rice | endoplasmic reticulum, mitochondrion, plasma membrane | 45.54 | 43.97 |
| Zm00001d028547_P001 | Maize | endoplasmic reticulum, golgi, plasma membrane | 47.32 | 39.26 |
| KRH00155 | Soybean | plastid | 81.25 | 39.06 |
| KXG39720 | Sorghum | cytosol, golgi, peroxisome | 45.54 | 38.64 |
| TraesCS4B01G213100.1 | Wheat | mitochondrion | 47.32 | 29.61 |
Protein Annotations
| EMBL:ACUP02000493 | EnsemblPlants:KRH75815 | EnsemblPlantsGene:GLYMA_01G111500 | EntrezGene:100778224 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:DUF962 | PANTHER:PTHR34205 | PANTHER:PTHR34205:SF2 | PFAM:PF06127 | ProteinID:KRH75815 |
| ProteinID:KRH75815.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI00023373F0 | UniProt:I1J772 | MapMan:35.2 |
Description
hypothetical protein
Coordinates
chr1:-:37804269..37805833
Molecular Weight (calculated)
13589.6 Da
IEP (calculated)
9.320
GRAVY (calculated)
0.190
Length
112 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFRSLEDFW AFYMNQHSKA STRRWHFAGT LFSILLFFCS LLFSWWFLLL VPFSGYGCAF YSHLFVERNF PEDLRHPFWS LLCDFKMFGF MLTGNMDREI
101: KRLGKRPVLQ VF
101: KRLGKRPVLQ VF
001: MNFRSFEEFW PFYMMQHSNP STRRLHFIGI IASIVALICS ILINWWFLAL VPLLGYGFAW YSHFFVEGNV PASFGHPLWS FLCDLKMFSL MLTGSMEREM
101: KRLGKRPLLQ LS
101: KRLGKRPLLQ LS
Arabidopsis Description
At3g09085 [Source:UniProtKB/TrEMBL;Acc:Q8LDK7]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.