Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- endoplasmic reticulum 1
- plasma membrane 2
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P10230_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G09085.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P33580_001 | Banana | mitochondrion | 80.91 | 78.76 |
| Bra034053.1-P | Field mustard | endoplasmic reticulum, nucleus, plasma membrane | 67.27 | 66.07 |
| CDY67522 | Canola | endoplasmic reticulum, nucleus, plasma membrane | 67.27 | 66.07 |
| KRH49272 | Soybean | endoplasmic reticulum | 69.09 | 65.52 |
| CDY67515 | Canola | endoplasmic reticulum | 66.36 | 65.18 |
| AT3G09085.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 66.36 | 65.18 |
| PGSC0003DMT400052348 | Potato | cytosol | 64.55 | 63.39 |
| Solyc09g013140.1.1 | Tomato | cytosol | 60.91 | 62.62 |
| KRH75815 | Soybean | endoplasmic reticulum, extracellular, nucleus | 62.73 | 61.61 |
| VIT_08s0007g01800.t01 | Wine grape | cytosol | 36.36 | 61.54 |
| KRH66020 | Soybean | endoplasmic reticulum, nucleus, plasma membrane, plastid | 61.82 | 60.71 |
| Os03t0265800-01 | Rice | endoplasmic reticulum, mitochondrion, plasma membrane | 63.64 | 60.34 |
| TraesCS4A01G091600.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 60.91 | 58.26 |
| TraesCS4D01G213900.1 | Wheat | cytosol, golgi, plasma membrane | 60.0 | 54.55 |
| Zm00001d028547_P001 | Maize | endoplasmic reticulum, golgi, plasma membrane | 60.91 | 49.63 |
| KXG39720 | Sorghum | cytosol, golgi, peroxisome | 59.09 | 49.24 |
| TraesCS4B01G213100.1 | Wheat | mitochondrion | 60.0 | 36.87 |
| KRH00155 | Soybean | plastid | 70.0 | 33.05 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P24240_001 | EnsemblPlants:GSMUA_Achr11T24240_001 | EnsemblPlantsGene:GSMUA_Achr11G24240_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF962 | PANTHER:PTHR34205 | PANTHER:PTHR34205:SF2 | PFAM:PF06127 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI0002963AF3 | UniProt:M0RV04 | MapMan:35.2 | : | : | : |
Description
membrane protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G24240_001]
Coordinates
chr11:+:23874481..23874813
Molecular Weight (calculated)
12721.7 Da
IEP (calculated)
10.200
GRAVY (calculated)
0.105
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MNCRSLEEYW AFYVSQHSKP STRRWHFGGT LAALLCLLLA ALRGSWRFLL LAPLLGYGPG WYSHFFVEGN PPAAFDRPLW SFLCDLKMFA LMLAGRMDRE
101: IKRLGKRPLL
101: IKRLGKRPLL
001: MNFRSFEEFW PFYMMQHSNP STRRLHFIGI IASIVALICS ILINWWFLAL VPLLGYGFAW YSHFFVEGNV PASFGHPLWS FLCDLKMFSL MLTGSMEREM
101: KRLGKRPLLQ LS
101: KRLGKRPLLQ LS
Arabidopsis Description
At3g09085 [Source:UniProtKB/TrEMBL;Acc:Q8LDK7]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
SUBAcon: [endoplasmic reticulum,cytosol,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.