Factsheet for PGSC0003DMT400001532

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400071510
PGSC0003DMT400073246
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17170.1	PGSC0003DMT400084737	AT1G27300.1	21798944
AT5G17170.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT5G17170.1	PGSC0003DMT400073246	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g096850.2.1	Tomato	plastid	97.84	97.84
Bra008575.1-P	Field mustard	cytosol	49.64	72.63
CDX69400	Canola	cytosol	49.64	72.63
KRH77719	Soybean	nucleus, plastid	70.14	71.17
CDX85473	Canola	plastid	67.63	69.37
CDY16955	Canola	plastid	61.15	69.11
AT5G17170.1	Thale cress	plastid	67.27	69.0
Os08t0162600-01	Rice	plastid	64.39	68.85
Bra023597.1-P	Field mustard	plastid	66.91	68.63
CDY02732	Canola	plastid	66.55	68.52
TraesCS7D01G293100.1	Wheat	plastid	62.95	67.57
TraesCS7B01G189500.2	Wheat	plastid	62.59	67.18
TraesCS7A01G294700.1	Wheat	plastid	62.59	67.18
GSMUA_Achr3P00400_001	Banana	extracellular, plasma membrane	17.63	61.25
VIT_16s0039g02540.t01	Wine grape	plastid	57.55	59.7
GSMUA_Achr3P00390_001	Banana	plastid	40.65	58.85
HORVU7Hr1G067110.3	Barley	plastid	61.51	56.25
KRH27766	Soybean	nucleus	70.14	54.17
OQU79958	Sorghum	plastid	64.03	53.29
Zm00001d024519_P005	Maize	cytosol	64.39	50.14
KRH58254	Soybean	plastid	29.14	44.02

Protein Annotations

EntrezGene:102602042	Gene3D:2.20.28.10	Gene3D:2.30.42.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488
GO:GO:0005506	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001478
InterPro:IPR024934	UniProt:M0ZIN1	InterPro:PDZ	InterPro:PDZ_sf	EnsemblPlantsGene:PGSC0003DMG400000569	PGSC:PGSC0003DMG400000569
EnsemblPlants:PGSC0003DMT400001532	PFscan:PS50106	PFscan:PS50903	PANTHER:PTHR45293	InterPro:Rubredoxin-like_dom	SUPFAM:SSF50156
SUPFAM:SSF57802	TMHMM:TMhelix	UniParc:UPI0002951714	RefSeq:XP_006347557.1	SEG:seg	:

Description

Electron transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400000569]

Coordinates

chr3:-:47014143..47017348

Molecular Weight (calculated)

28948.7 Da

IEP (calculated)

10.080

GRAVY (calculated)

-0.112

Length

278 amino acids

Sequence
(BLAST)

001: MASAVVAGAA SSSCSVSYSR NLSITKSSAS IPSLKSSTTP SQKTSFQGLS LQEAKRGVSN TILGAESKRN ATSNGGSRGL EITARKAAAA KNIEVEVDKP
101: LGLTLGPKQG GGVLITGIEN GGNAARAGLK VGDQVVYTSS FFGDELWPAD KLGFTKTAIQ AKPDSVYFVI SRGADVDVKR LPKRPAPPQF GRKLTDAQKV
201: RATHICLDCG YIYTLPKSFD EQPEDYACPQ CIAPKKRFAR YDVNTGRAIG GGLPPIGVII GLIAGIGGVG ALLVYGLQ

Best Arabidopsis Sequence Match ( AT5G17170.1 )
(BLAST)

001: MATSGAISGA TVSSFFTKTT TTSNPSPKLH SSASLLSQKT VFQGVSLEDS KKSVSEIFAV SERKIGGLNG LRRFEIKARA AASKTIEVEV DKPLGLTLGQ
101: KQGGGVVITG VDGGGNAAKA GLKSGDQVVY TSSFFGDELW PADKLGFTKT AIQAKPDSVY FVVSRGAEVD VKKLNKRPAP PRFGRKLTET QKARATHICL
201: DCGFIYTLPK SFDEQPDTYV CPQCIAPKKR FAKYDVNTGK AIGGGLPPIG VIVGLLAGLG AVGALLVYGL Q

Arabidopsis Description

ENH1Rubredoxin family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.