Factsheet for TraesCS7D01G293100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 18071923

msms PMID: 18071923 doi

LA Blomqvist, M Ryberg, C Sundqvist

Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G345400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17170.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT5G17170.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT5G17170.1	TraesCS2D01G345400.1	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G294700.1	Wheat	plastid	98.46	98.46
TraesCS7B01G189500.2	Wheat	plastid	97.68	97.68
Os08t0162600-01	Rice	plastid	85.33	85.0
HORVU7Hr1G067110.3	Barley	plastid	95.37	81.25
Bra008575.1-P	Field mustard	cytosol	50.97	69.47
CDX69400	Canola	cytosol	50.97	69.47
VIT_16s0039g02530.t01	Wine grape	cytosol, extracellular, plasma membrane	15.83	67.21
CDY16955	Canola	plastid	61.0	64.23
Bra023597.1-P	Field mustard	plastid	66.8	63.84
CDY02732	Canola	plastid	66.41	63.7
OQU79958	Sorghum	plastid	81.47	63.17
CDX85473	Canola	plastid	66.02	63.1
AT5G17170.1	Thale cress	plastid	66.02	63.1
PGSC0003DMT400001532	Potato	plastid	67.57	62.95
Solyc03g096850.2.1	Tomato	plastid	66.8	62.23
KRH77719	Soybean	nucleus, plastid	65.25	61.68
GSMUA_Achr3P00390_001	Banana	plastid	45.17	60.94
Zm00001d024519_P005	Maize	cytosol	81.08	58.82
VIT_16s0039g02540.t01	Wine grape	plastid	55.21	53.36
KRH27766	Soybean	nucleus	65.25	46.94
KRH58254	Soybean	plastid	31.66	44.57

Protein Annotations

Gene3D:2.20.28.10	Gene3D:2.30.42.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005506
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507
GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009941	GO:GO:0016020
InterPro:IPR001478	InterPro:IPR024934	InterPro:PDZ	InterPro:PDZ_sf	PFscan:PS50106	PFscan:PS50903
PANTHER:PTHR45293	InterPro:Rubredoxin-like_dom	SUPFAM:SSF50156	SUPFAM:SSF57802	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS7D01G293100
EnsemblPlants:TraesCS7D01G293100.1	TIGR:cd00992	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7D:-:362374954..362376527

Molecular Weight (calculated)

27367.0 Da

IEP (calculated)

10.229

GRAVY (calculated)

-0.101

Length

259 amino acids

Sequence
(BLAST)

001: MAATLSSVSA SSKHCSVVRA QHSPLPSILT TSPAKKTAFH GVSLVDSRWL RSGGARRRLV QVNAKTAGAA KNIEVEVDKP LGLTLGQKSG GGVVITGVES
101: GGNAARAGLK SGDQVLYTSS FFGDELWPAD KLGFTKTAIQ AKPDSVYFVV SRGGGDIDVK RLPKRPAPPR FGRKLSDSQK ARATHICLDC GYIYFLPKAF
201: EEQPDEYGCP QCNAPKKRFA RYDVESGKPI GGALPPLTVI VSLVIGIAGI GALLVYGLQ

Best Arabidopsis Sequence Match ( AT5G17170.1 )
(BLAST)

001: MATSGAISGA TVSSFFTKTT TTSNPSPKLH SSASLLSQKT VFQGVSLEDS KKSVSEIFAV SERKIGGLNG LRRFEIKARA AASKTIEVEV DKPLGLTLGQ
101: KQGGGVVITG VDGGGNAAKA GLKSGDQVVY TSSFFGDELW PADKLGFTKT AIQAKPDSVY FVVSRGAEVD VKKLNKRPAP PRFGRKLTET QKARATHICL
201: DCGFIYTLPK SFDEQPDTYV CPQCIAPKKR FAKYDVNTGK AIGGGLPPIG VIVGLLAGLG AVGALLVYGL Q

Arabidopsis Description

ENH1Rubredoxin family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.