CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH11076
KRH21197
KRH31520
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036
KRH76090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17170.1	KRG97393	AT1G27300.1	21798944
AT5G17170.1	KRH31520	AT1G27300.1	21798944
AT5G17170.1	KRH76090	AT1G27300.1	21798944
AT5G17170.1	KRH11076	AT4G19030.1	21798944
AT5G17170.1	KRH21197	AT4G19030.1	21798944
AT5G17170.1	KRH42923	AT4G19030.1	21798944
AT5G17170.1	KRH42926	AT4G19030.1	21798944
AT5G17170.1	KRH45251	AT4G19030.1	21798944
AT5G17170.1	KRH59035	AT4G19030.1	21798944
AT5G17170.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77719	Soybean	nucleus, plastid	74.44	97.81
Bra008575.1-P	Field mustard	cytosol	41.11	77.89
CDX69400	Canola	cytosol	41.11	77.89
AT5G17170.1	Thale cress	plastid	57.78	76.75
CDY02732	Canola	plastid	57.22	76.3
Bra023597.1-P	Field mustard	plastid	57.22	76.01
CDX85473	Canola	plastid	57.22	76.01
CDY16955	Canola	plastid	50.56	73.98
Solyc03g096850.2.1	Tomato	plastid	55.28	71.58
PGSC0003DMT400001532	Potato	plastid	54.17	70.14
Os08t0162600-01	Rice	plastid	50.56	70.0
GSMUA_Achr3P00400_001	Banana	extracellular, plasma membrane	14.72	66.25
TraesCS7A01G294700.1	Wheat	plastid	47.22	65.64
TraesCS7B01G189500.2	Wheat	plastid	46.94	65.25
TraesCS7D01G293100.1	Wheat	plastid	46.94	65.25
GSMUA_Achr3P00390_001	Banana	plastid	33.89	63.54
KRH58254	Soybean	plastid	29.17	57.07
HORVU7Hr1G067110.3	Barley	plastid	46.39	54.93
OQU79958	Sorghum	plastid	50.28	54.19
Zm00001d024519_P005	Maize	cytosol	48.61	49.02

Protein Annotations

Gene3D:2.20.28.10	Gene3D:2.30.42.10	MapMan:35.2	EMBL:ACUP02006733	EnsemblPlantsGene:GLYMA_11G012700	GO:GO:0003674
GO:GO:0005488	GO:GO:0005506	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR001478	InterPro:IPR024934	UniProt:K7LMH5	EnsemblPlants:KRH27766	ProteinID:KRH27766	ProteinID:KRH27766.1
InterPro:PDZ	InterPro:PDZ_sf	PFscan:PS50106	PFscan:PS50903	PANTHER:PTHR45293	InterPro:Rubredoxin-like_dom
SUPFAM:SSF50156	SUPFAM:SSF57802	TMHMM:TMhelix	UniParc:UPI000295A0DF	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:+:886911..889621

Molecular Weight (calculated)

38863.8 Da

IEP (calculated)

10.296

GRAVY (calculated)

-0.214

Length

360 amino acids

Sequence
(BLAST)

001: MHSHRVLNGE LHQQFTVLES HTVRVVWCLH LHHQSNIIYI FKLKEFSLNT IKKILKRKGE TLSSYYSEGK CVLFGGQFPS TRLTGNMSAV VAGSSSSFSA
101: TFTTRRSPSL KNSQLSHSKT LTSPQCQKTS LQGLSLHEAK RGVSESFLVE NKNGSSIAGR RLEIKARTAG ASKTIEVEVD KPLGLTLGQK SGGGVVITAV
201: DGGGNAARAG LKAGDQVLYT SSFFGDELWP ADKLGFTKTA IQAKPDSVYF VVSRGAEVDV KKLTKRPAPP RFGRKLTETQ KARATHICLD CGYIYTLQKS
301: FDEQPDTYGC PQCQAPKKRF ARYDVNTGKA IGGGLPPIGV IIGLLAGVGA VGALLVYGLQ

Best Arabidopsis Sequence Match ( AT5G17170.1 )
(BLAST)

001: MATSGAISGA TVSSFFTKTT TTSNPSPKLH SSASLLSQKT VFQGVSLEDS KKSVSEIFAV SERKIGGLNG LRRFEIKARA AASKTIEVEV DKPLGLTLGQ
101: KQGGGVVITG VDGGGNAAKA GLKSGDQVVY TSSFFGDELW PADKLGFTKT AIQAKPDSVY FVVSRGAEVD VKKLNKRPAP PRFGRKLTET QKARATHICL
201: DCGFIYTLPK SFDEQPDTYV CPQCIAPKKR FAKYDVNTGK AIGGGLPPIG VIVGLLAGLG AVGALLVYGL Q

Arabidopsis Description

ENH1Rubredoxin family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.