Factsheet for Os08t0162600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
extracellular 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 19621931
plastid: 21433289
extracellular: 28232208

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0509600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17170.1	Os02t0509600-01	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G293100.1	Wheat	plastid	85.0	85.33
TraesCS7A01G294700.1	Wheat	plastid	84.62	84.94
TraesCS7B01G189500.2	Wheat	plastid	84.23	84.56
HORVU7Hr1G067110.3	Barley	plastid	83.85	71.71
Bra008575.1-P	Field mustard	cytosol	51.92	71.05
CDX69400	Canola	cytosol	51.92	71.05
KRH77719	Soybean	nucleus, plastid	70.77	67.15
AT5G17170.1	Thale cress	plastid	69.62	66.79
OQU79958	Sorghum	plastid	85.77	66.77
CDY16955	Canola	plastid	63.08	66.67
Bra023597.1-P	Field mustard	plastid	68.46	65.68
VIT_16s0039g02530.t01	Wine grape	cytosol, extracellular, plasma membrane	15.38	65.57
CDY02732	Canola	plastid	68.08	65.56
GSMUA_Achr3P00390_001	Banana	plastid	48.08	65.1
CDX85473	Canola	plastid	67.69	64.94
PGSC0003DMT400001532	Potato	plastid	68.85	64.39
Solyc03g096850.2.1	Tomato	plastid	68.85	64.39
Zm00001d024519_P005	Maize	cytosol	84.23	61.34
VIT_16s0039g02540.t01	Wine grape	plastid	58.85	57.09
KRH27766	Soybean	nucleus	70.0	50.56
KRH58254	Soybean	plastid	31.54	44.57

Protein Annotations

Gene3D:2.20.28.10	Gene3D:2.30.42.10	MapMan:35.2	EntrezGene:4344733	EMBL:AK060121	EMBL:AK070227
ProteinID:BAC57824.1	ProteinID:BAC99896.1	ProteinID:BAF22974.1	ProteinID:BAT03954.1	ProteinID:EEE68092.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005506	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009941	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001478	InterPro:IPR024934	EnsemblPlantsGene:Os08g0162600
EnsemblPlants:Os08t0162600-01	InterPro:PDZ	InterPro:PDZ_sf	PFscan:PS50106	PFscan:PS50903	PANTHER:PTHR45293
UniProt:Q84SC5	InterPro:Rubredoxin-like_dom	SUPFAM:SSF50156	SUPFAM:SSF57802	TMHMM:TMhelix	UniParc:UPI000000473A
RefSeq:XP_015648775.1	SEG:seg	:	:	:	:

Description

Rubredoxin-type Fe(Cys)4 protein family proteinRubredoxin-type Fe(Cys)4 protein family protein. (Os08t0162600-01);Rubredoxin-type Fe(Cys)4 protein family protein. (Os08t0162600-02);Similar to predicted protein. (Os08t0162600-03)

Coordinates

chr8:+:3694305..3696636

Molecular Weight (calculated)

27487.2 Da

IEP (calculated)

10.353

GRAVY (calculated)

-0.129

Length

260 amino acids

Sequence
(BLAST)

001: MAATLSSAPA PSKHCSIVRA QHSPPPSILS SSTKTAFHGL SLVDRRWAAS VGGGSGRRRR VLQVNARTAG AAKNIEVEVD KPLGLTLGQK TGGGVVITAV
101: DSGGNAARAG LKSGDQVLYT SSFFGDELWP ADKLGFTKTA IQAKPDSVYF VVSRGAQVDV KRLPKRPAPP RFGRKLTESQ KARATHICLD CGYIYFLPKP
201: FEEQPDEYGC PQCNAPKKRF AKYDAETGRA IGGALPPITV IVSLIIGIAG VGALLVYGLQ

Best Arabidopsis Sequence Match ( AT5G17170.1 )
(BLAST)

001: MATSGAISGA TVSSFFTKTT TTSNPSPKLH SSASLLSQKT VFQGVSLEDS KKSVSEIFAV SERKIGGLNG LRRFEIKARA AASKTIEVEV DKPLGLTLGQ
101: KQGGGVVITG VDGGGNAAKA GLKSGDQVVY TSSFFGDELW PADKLGFTKT AIQAKPDSVY FVVSRGAEVD VKKLNKRPAP PRFGRKLTET QKARATHICL
201: DCGFIYTLPK SFDEQPDTYV CPQCIAPKKR FAKYDVNTGK AIGGGLPPIG VIVGLLAGLG AVGALLVYGL Q

Arabidopsis Description

ENH1Rubredoxin family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.