CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX84933
CDX98596
CDX99411
CDY01565
CDY03907
CDY15722
CDY27605

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17170.1	CDX84933	AT1G27300.1	21798944
AT5G17170.1	CDY03907	AT1G27300.1	21798944
AT5G17170.1	CDY15722	AT1G27300.1	21798944
AT5G17170.1	CDY27605	AT1G27300.1	21798944
AT5G17170.1	CDX78905	AT4G19030.1	21798944
AT5G17170.1	CDX98596	AT4G19030.1	21798944
AT5G17170.1	CDX99411	AT4G19030.1	21798944
AT5G17170.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02732	Canola	plastid	91.46	83.33
Bra023597.1-P	Field mustard	plastid	90.65	82.29
AT5G17170.1	Thale cress	plastid	89.84	81.55
CDX85473	Canola	plastid	89.43	81.18
CDX69400	Canola	cytosol	61.79	80.0
KRH77719	Soybean	nucleus, plastid	73.98	66.42
Os08t0162600-01	Rice	plastid	66.67	63.08
TraesCS7B01G189500.2	Wheat	plastid	65.04	61.78
TraesCS7A01G294700.1	Wheat	plastid	64.63	61.39
PGSC0003DMT400001532	Potato	plastid	69.11	61.15
Solyc03g096850.2.1	Tomato	plastid	69.11	61.15
TraesCS7D01G293100.1	Wheat	plastid	64.23	61.0
GSMUA_Achr3P00390_001	Banana	plastid	44.31	56.77
VIT_16s0039g02540.t01	Wine grape	plastid	57.72	52.99
HORVU7Hr1G067110.3	Barley	plastid	64.23	51.97
KRH27766	Soybean	nucleus	73.98	50.56
GSMUA_Achr3P00400_001	Banana	extracellular, plasma membrane	16.26	50.0
OQU79958	Sorghum	plastid	65.45	48.2
Zm00001d024519_P005	Maize	cytosol	64.63	44.54
KRH58254	Soybean	plastid	30.89	41.3

Protein Annotations

Gene3D:2.20.28.10	Gene3D:2.30.42.10	MapMan:35.2	GO:A0A078FR44	UniProt:A0A078FR44	EnsemblPlants:CDY16955
ProteinID:CDY16955	ProteinID:CDY16955.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005506
GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00094885001	InterPro:IPR001478	InterPro:IPR024934	InterPro:PDZ	InterPro:PDZ_sf
PFscan:PS50106	PFscan:PS50903	PANTHER:PTHR45293	InterPro:Rubredoxin-like_dom	SUPFAM:SSF50156	SUPFAM:SSF57802
UniParc:UPI0004EE961B	SEG:seg	:	:	:	:

Description

BnaC09g40820DBnaC09g40820D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FR44]

Coordinates

chrLK032068:-:562739..564236

Molecular Weight (calculated)

26099.4 Da

IEP (calculated)

10.194

GRAVY (calculated)

-0.169

Length

246 amino acids

Sequence
(BLAST)

001: MATPGSISGA TVSSLYTKTA STSNPSPKLH SSSSSFPLSV SEIFAVSDRK IGVLNGARRF EVKARTAASK TIEVEVDKPL GLTLGQKQGG GVVITGVEGG
101: GNAAKAGLKS GDQVLYTSSF FGDELWPADK LGFTKTAIRA KPDSVYFVVS RGAEVDVKKL NKRPAPPRFG RKLTETQKAS IARATHICLD CGFIYTLPKP
201: FDEQPETYVC PQCIAPKKRF ARYDVNTGKA IGGGLPPIAL LVYGLQ

Best Arabidopsis Sequence Match ( AT5G17170.1 )
(BLAST)

001: MATSGAISGA TVSSFFTKTT TTSNPSPKLH SSASLLSQKT VFQGVSLEDS KKSVSEIFAV SERKIGGLNG LRRFEIKARA AASKTIEVEV DKPLGLTLGQ
101: KQGGGVVITG VDGGGNAAKA GLKSGDQVVY TSSFFGDELW PADKLGFTKT AIQAKPDSVY FVVSRGAEVD VKKLNKRPAP PRFGRKLTET QKARATHICL
201: DCGFIYTLPK SFDEQPDTYV CPQCIAPKKR FAKYDVNTGK AIGGGLPPIG VIVGLLAGLG AVGALLVYGL Q

Arabidopsis Description

ENH1Rubredoxin family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.