CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
cytosol 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH11076
KRH21197
KRH31520
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036
KRH76090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17170.1	KRG97393	AT1G27300.1	21798944
AT5G17170.1	KRH31520	AT1G27300.1	21798944
AT5G17170.1	KRH76090	AT1G27300.1	21798944
AT5G17170.1	KRH11076	AT4G19030.1	21798944
AT5G17170.1	KRH21197	AT4G19030.1	21798944
AT5G17170.1	KRH42923	AT4G19030.1	21798944
AT5G17170.1	KRH42926	AT4G19030.1	21798944
AT5G17170.1	KRH45251	AT4G19030.1	21798944
AT5G17170.1	KRH59035	AT4G19030.1	21798944
AT5G17170.1	KRH59036	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008575.1-P	Field mustard	cytosol	54.38	78.42
CDX69400	Canola	cytosol	54.38	78.42
CDY02732	Canola	plastid	75.18	76.3
Bra023597.1-P	Field mustard	plastid	75.18	76.01
CDX85473	Canola	plastid	75.18	76.01
AT5G17170.1	Thale cress	plastid	75.18	76.01
KRH27766	Soybean	nucleus	97.81	74.44
CDY16955	Canola	plastid	66.42	73.98
Solyc03g096850.2.1	Tomato	plastid	72.63	71.58
Os08t0162600-01	Rice	plastid	67.15	70.77
PGSC0003DMT400001532	Potato	plastid	71.17	70.14
GSMUA_Achr3P00400_001	Banana	extracellular, plasma membrane	19.34	66.25
TraesCS7A01G294700.1	Wheat	plastid	62.04	65.64
TraesCS7B01G189500.2	Wheat	plastid	61.68	65.25
TraesCS7D01G293100.1	Wheat	plastid	61.68	65.25
GSMUA_Achr3P00390_001	Banana	plastid	44.53	63.54
KRH58254	Soybean	plastid	38.69	57.61
HORVU7Hr1G067110.3	Barley	plastid	61.31	55.26
OQU79958	Sorghum	plastid	64.23	52.69
Zm00001d024519_P005	Maize	cytosol	62.77	48.18

Protein Annotations

EntrezGene:100785369	Gene3D:2.20.28.10	Gene3D:2.30.42.10	MapMan:35.2	EMBL:ACUP02000683	EnsemblPlantsGene:GLYMA_01G229800
GO:GO:0003674	GO:GO:0005488	GO:GO:0005506	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	UniProt:I1JAI9	InterPro:IPR001478	InterPro:IPR024934	EnsemblPlants:KRH77719	ProteinID:KRH77719
ProteinID:KRH77719.1	InterPro:PDZ	InterPro:PDZ_sf	PFscan:PS50106	PFscan:PS50903	PANTHER:PTHR45293
InterPro:Rubredoxin-like_dom	SUPFAM:SSF50156	SUPFAM:SSF57802	TMHMM:TMhelix	UniParc:UPI000233780A	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:55744644..55747328

Molecular Weight (calculated)

28761.5 Da

IEP (calculated)

10.031

GRAVY (calculated)

-0.151

Length

274 amino acids

Sequence
(BLAST)

001: MSAVVAGSSS SFSATFTPIR SPSLKNSQLS HSKALTSPQC QKTSLQGLSL HEAKRGVSES FLVENNNGSS IAGRRLEITA RTAGASKTIE VEVDKPLGLT
101: LGQKSGGGVV ITAVDGGGNA ARAGLKAGDQ VLYTSSFFGD ELWPADKLGF TKTAIQAKPD SVYFVVSRGA EVDVKKLTKR PAPPRFGRKL TETQKARATH
201: ICLDCGYIYT LQKPFDEQPD TYGCPQCQAP KKRFARYDVN TGKAIGGGLP PIGVIIGLLA GVGAVGALLV YGLQ

Best Arabidopsis Sequence Match ( AT5G17170.1 )
(BLAST)

001: MATSGAISGA TVSSFFTKTT TTSNPSPKLH SSASLLSQKT VFQGVSLEDS KKSVSEIFAV SERKIGGLNG LRRFEIKARA AASKTIEVEV DKPLGLTLGQ
101: KQGGGVVITG VDGGGNAAKA GLKSGDQVVY TSSFFGDELW PADKLGFTKT AIQAKPDSVY FVVSRGAEVD VKKLNKRPAP PRFGRKLTET QKARATHICL
201: DCGFIYTLPK SFDEQPDTYV CPQCIAPKKR FAKYDVNTGK AIGGGLPPIG VIVGLLAGLG AVGALLVYGL Q

Arabidopsis Description

ENH1Rubredoxin family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.