Factsheet for Zm00001d024519_P005

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016570_P001
Zm00001d050563_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17170.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT5G17170.1	Zm00001d050563_P001	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os08t0162600-01	Rice	plastid	61.34	84.23
TraesCS7A01G294700.1	Wheat	plastid	59.1	81.47
TraesCS7D01G293100.1	Wheat	plastid	58.82	81.08
TraesCS7B01G189500.2	Wheat	plastid	58.82	81.08
OQU79958	Sorghum	plastid	69.19	73.95
Bra008575.1-P	Field mustard	cytosol	37.82	71.05
CDX69400	Canola	cytosol	37.82	71.05
HORVU7Hr1G067110.3	Barley	plastid	58.82	69.08
VIT_16s0039g02530.t01	Wine grape	cytosol, extracellular, plasma membrane	11.76	68.85
CDY16955	Canola	plastid	44.54	64.63
PGSC0003DMT400001532	Potato	plastid	50.14	64.39
CDY02732	Canola	plastid	48.46	64.07
Bra023597.1-P	Field mustard	plastid	48.18	63.47
Solyc03g096850.2.1	Tomato	plastid	49.3	63.31
AT5G17170.1	Thale cress	plastid	47.9	63.1
KRH77719	Soybean	nucleus, plastid	48.18	62.77
CDX85473	Canola	plastid	47.62	62.73
GSMUA_Achr3P00390_001	Banana	plastid	32.77	60.94
VIT_16s0039g02540.t01	Wine grape	plastid	39.22	52.24
KRH27766	Soybean	nucleus	49.02	48.61
KRH58254	Soybean	plastid	22.13	42.93

Protein Annotations

Gene3D:2.20.28.10	Gene3D:2.30.42.10	MapMan:35.2	UniProt:A0A1D6IZR3	ProteinID:AQK41348.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005506	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009534	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579
GO:GO:0009941	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001478	InterPro:IPR024934	InterPro:PDZ
InterPro:PDZ_sf	PFscan:PS50106	PFscan:PS50903	PANTHER:PTHR45293	InterPro:Rubredoxin-like_dom	SUPFAM:SSF50156
SUPFAM:SSF57802	TMHMM:TMhelix	UniParc:UPI000843F755	EnsemblPlantsGene:Zm00001d024519	EnsemblPlants:Zm00001d024519_P005	EnsemblPlants:Zm00001d024519_T005
SEG:seg	:	:	:	:	:

Description

rubredoxin family protein

Coordinates

chr10:-:75764388..75780281

Molecular Weight (calculated)

38350.4 Da

IEP (calculated)

10.234

GRAVY (calculated)

-0.217

Length

357 amino acids

Sequence
(BLAST)

001: MDQPGCSVMI KNCYVSCNRH IVCTLDVIIR KRRKEMGGGC PTSPCQPHSL HTTRGHEHHS CLSHGPRAAQ HLHLSKWQPA AVPFLHPLPS SQSQPLTMAA
101: TLSSVAAPSL PKHIPVTRAQ QQAPPSIISA STKTAFHGVS LVVDRRWAAG HRRGGGRRRL LQVNARTAAK NIEVEVEKPL GLALGQKPGG GVVITSVESG
201: GNAARAGLKT GDQVLYTSSF FGDELWPADK LGFTKTAIQA KSDSVYFVVS RGAEVDVKRL PKRPAPPRFG RKLTDSQKER ATHVCLDCGY IYFLPKPFDE
301: QPDDYGCPQC NAPKKRFARY DAATGKAIGG ALPPIAVIVS LVIGIAGVGA LLVYGLQ

Best Arabidopsis Sequence Match ( AT5G17170.1 )
(BLAST)

001: MATSGAISGA TVSSFFTKTT TTSNPSPKLH SSASLLSQKT VFQGVSLEDS KKSVSEIFAV SERKIGGLNG LRRFEIKARA AASKTIEVEV DKPLGLTLGQ
101: KQGGGVVITG VDGGGNAAKA GLKSGDQVVY TSSFFGDELW PADKLGFTKT AIQAKPDSVY FVVSRGAEVD VKKLNKRPAP PRFGRKLTET QKARATHICL
201: DCGFIYTLPK SFDEQPDTYV CPQCIAPKKR FAKYDVNTGK AIGGGLPPIG VIVGLLAGLG AVGALLVYGL Q

Arabidopsis Description

ENH1Rubredoxin family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.