CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX84933
CDX98596
CDX99411
CDY01565
CDY03907
CDY15722
CDY27605

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17170.1	CDX84933	AT1G27300.1	21798944
AT5G17170.1	CDY03907	AT1G27300.1	21798944
AT5G17170.1	CDY15722	AT1G27300.1	21798944
AT5G17170.1	CDY27605	AT1G27300.1	21798944
AT5G17170.1	CDX78905	AT4G19030.1	21798944
AT5G17170.1	CDX98596	AT4G19030.1	21798944
AT5G17170.1	CDX99411	AT4G19030.1	21798944
AT5G17170.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008575.1-P	Field mustard	cytosol	100.0	100.0
CDY16955	Canola	plastid	80.0	61.79
CDY02732	Canola	plastid	83.68	58.89
CDX85473	Canola	plastid	82.63	57.93
AT5G17170.1	Thale cress	plastid	82.63	57.93
KRH77719	Soybean	nucleus, plastid	78.42	54.38
Os08t0162600-01	Rice	plastid	71.05	51.92
TraesCS7A01G294700.1	Wheat	plastid	69.47	50.97
TraesCS7B01G189500.2	Wheat	plastid	69.47	50.97
TraesCS7D01G293100.1	Wheat	plastid	69.47	50.97
GSMUA_Achr3P00400_001	Banana	extracellular, plasma membrane	21.05	50.0
Solyc03g096850.2.1	Tomato	plastid	73.16	50.0
PGSC0003DMT400001532	Potato	plastid	72.63	49.64
GSMUA_Achr3P00390_001	Banana	plastid	45.79	45.31
VIT_16s0039g02540.t01	Wine grape	plastid	61.58	43.66
HORVU7Hr1G067110.3	Barley	plastid	69.47	43.42
KRH27766	Soybean	nucleus	77.89	41.11
OQU79958	Sorghum	plastid	70.53	40.12
Zm00001d024519_P005	Maize	cytosol	71.05	37.82
KRH58254	Soybean	plastid	33.68	34.78

Protein Annotations

Gene3D:2.20.28.10	Gene3D:2.30.42.10	MapMan:35.2	GO:A0A078BX67	EnsemblPlants:CDX69400	ProteinID:CDX69400
ProteinID:CDX69400.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005506	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00135366001
InterPro:IPR001478	InterPro:IPR024934	InterPro:PDZ	InterPro:PDZ_sf	PFscan:PS50106	PFscan:PS50903
PANTHER:PTHR45293	InterPro:Rubredoxin-like_dom	SUPFAM:SSF50156	SUPFAM:SSF57802	TMHMM:TMhelix	UniParc:UPI00025446A7
SEG:seg	:	:	:	:	:

Description

BnaA10g17490D

Coordinates

chrLK031790:-:54635..55586

Molecular Weight (calculated)

20128.6 Da

IEP (calculated)

10.194

GRAVY (calculated)

-0.086

Length

190 amino acids

Sequence
(BLAST)

001: MRLPRKGYPL GGLGQKQGGG VVITGVEGGG NAAKAGLKSG DQVLYTSSFF GDELWPADKL RFSKTAIQAK PDSVYFVVSR GAEVDVKKLN KRSAPPRFGR
101: KLTETQKASI ARATHICLDC GFIYTLPKPF DEQPETYVCP QCIAPKKRFA RYDVNTGKAI GGGLPPIGVI VGLLAGLGAV GALLVYGSLQ

Best Arabidopsis Sequence Match ( AT5G17170.1 )
(BLAST)

001: MATSGAISGA TVSSFFTKTT TTSNPSPKLH SSASLLSQKT VFQGVSLEDS KKSVSEIFAV SERKIGGLNG LRRFEIKARA AASKTIEVEV DKPLGLTLGQ
101: KQGGGVVITG VDGGGNAAKA GLKSGDQVVY TSSFFGDELW PADKLGFTKT AIQAKPDSVY FVVSRGAEVD VKKLNKRPAP PRFGRKLTET QKARATHICL
201: DCGFIYTLPK SFDEQPDTYV CPQCIAPKKR FAKYDVNTGK AIGGGLPPIG VIVGLLAGLG AVGALLVYGL Q

Arabidopsis Description

ENH1Rubredoxin family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.