Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr4P10230_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G17170.1 | GSMUA_Achr4P10230_001 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_16s0039g02530.t01 | Wine grape | cytosol, extracellular, plasma membrane | 56.25 | 73.77 |
| Bra008575.1-P | Field mustard | cytosol | 50.0 | 21.05 |
| CDX69400 | Canola | cytosol | 50.0 | 21.05 |
| KRH77719 | Soybean | nucleus, plastid | 66.25 | 19.34 |
| CDX85473 | Canola | plastid | 65.0 | 19.19 |
| CDY02732 | Canola | plastid | 63.75 | 18.89 |
| AT5G17170.1 | Thale cress | plastid | 63.75 | 18.82 |
| Bra023597.1-P | Field mustard | plastid | 63.75 | 18.82 |
| PGSC0003DMT400001532 | Potato | plastid | 61.25 | 17.63 |
| Solyc03g096850.2.1 | Tomato | plastid | 60.0 | 17.27 |
| CDY16955 | Canola | plastid | 50.0 | 16.26 |
| KRH27766 | Soybean | nucleus | 66.25 | 14.72 |
| VIT_16s0039g02540.t01 | Wine grape | plastid | 17.5 | 5.22 |
| KRH58254 | Soybean | plastid | 8.75 | 3.8 |
| GSMUA_Achr3P00390_001 | Banana | plastid | 6.25 | 2.6 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr3P00400_001 | EnsemblPlants:GSMUA_Achr3T00400_001 | EnsemblPlantsGene:GSMUA_Achr3G00400_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR45293 | SEG:seg | SignalP:SignalP-noTM | SUPFAM:SSF57802 | TMHMM:TMhelix | UniParc:UPI0002951587 |
| UniProt:M0SAK8 | MapMan:35.2 | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G00400_001]
Coordinates
chr3:+:325665..326628
Molecular Weight (calculated)
8550.7 Da
IEP (calculated)
9.253
GRAVY (calculated)
0.491
Length
80 amino acids
Sequence
(BLAST)
(BLAST)
1: MKHQWEGSFL FVIVSLRVLH LTSSPDTYIC PQCNAPKKRF VRYDVETGKP IGGGLPPIGV LVGLAVGVAA VGALLVYGLQ
001: MATSGAISGA TVSSFFTKTT TTSNPSPKLH SSASLLSQKT VFQGVSLEDS KKSVSEIFAV SERKIGGLNG LRRFEIKARA AASKTIEVEV DKPLGLTLGQ
101: KQGGGVVITG VDGGGNAAKA GLKSGDQVVY TSSFFGDELW PADKLGFTKT AIQAKPDSVY FVVSRGAEVD VKKLNKRPAP PRFGRKLTET QKARATHICL
201: DCGFIYTLPK SFDEQPDTYV CPQCIAPKKR FAKYDVNTGK AIGGGLPPIG VIVGLLAGLG AVGALLVYGL Q
101: KQGGGVVITG VDGGGNAAKA GLKSGDQVVY TSSFFGDELW PADKLGFTKT AIQAKPDSVY FVVSRGAEVD VKKLNKRPAP PRFGRKLTET QKARATHICL
201: DCGFIYTLPK SFDEQPDTYV CPQCIAPKKR FAKYDVNTGK AIGGGLPPIG VIVGLLAGLG AVGALLVYGL Q
Arabidopsis Description
ENH1Rubredoxin family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFJ2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.