CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX78905
CDX84933
CDX98596
CDX99411
CDY01565
CDY03907
CDY15722
CDY27605

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17170.1	CDX84933	AT1G27300.1	21798944
AT5G17170.1	CDY03907	AT1G27300.1	21798944
AT5G17170.1	CDY15722	AT1G27300.1	21798944
AT5G17170.1	CDY27605	AT1G27300.1	21798944
AT5G17170.1	CDX78905	AT4G19030.1	21798944
AT5G17170.1	CDX98596	AT4G19030.1	21798944
AT5G17170.1	CDX99411	AT4G19030.1	21798944
AT5G17170.1	CDY01565	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023597.1-P	Field mustard	plastid	98.16	98.16
CDY02732	Canola	plastid	97.42	97.78
AT5G17170.1	Thale cress	plastid	91.51	91.51
CDY16955	Canola	plastid	81.18	89.43
CDX69400	Canola	cytosol	57.93	82.63
KRH77719	Soybean	nucleus, plastid	76.01	75.18
Os08t0162600-01	Rice	plastid	64.94	67.69
PGSC0003DMT400001532	Potato	plastid	69.37	67.63
Solyc03g096850.2.1	Tomato	plastid	69.0	67.27
TraesCS7B01G189500.2	Wheat	plastid	63.84	66.8
TraesCS7A01G294700.1	Wheat	plastid	63.47	66.41
TraesCS7D01G293100.1	Wheat	plastid	63.1	66.02
GSMUA_Achr3P00400_001	Banana	extracellular, plasma membrane	19.19	65.0
GSMUA_Achr3P00390_001	Banana	plastid	43.91	61.98
VIT_16s0039g02540.t01	Wine grape	plastid	57.2	57.84
KRH27766	Soybean	nucleus	76.01	57.22
HORVU7Hr1G067110.3	Barley	plastid	62.73	55.92
OQU79958	Sorghum	plastid	63.84	51.8
Zm00001d024519_P005	Maize	cytosol	62.73	47.62
KRH58254	Soybean	plastid	31.37	46.2

Protein Annotations

Gene3D:2.20.28.10	Gene3D:2.30.42.10	MapMan:35.2	GO:A0A078DDV9	EnsemblPlants:CDX85473	ProteinID:CDX85473
ProteinID:CDX85473.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005506	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00143171001
InterPro:IPR001478	InterPro:IPR024934	InterPro:PDZ	InterPro:PDZ_sf	PFscan:PS50106	PFscan:PS50903
PANTHER:PTHR45293	InterPro:Rubredoxin-like_dom	SUPFAM:SSF50156	SUPFAM:SSF57802	TMHMM:TMhelix	UniParc:UPI0004EE1145
SEG:seg	:	:	:	:	:

Description

BnaA02g03400D

Coordinates

chrLK031842:-:252192..254003

Molecular Weight (calculated)

28543.4 Da

IEP (calculated)

10.108

GRAVY (calculated)

-0.103

Length

271 amino acids

Sequence
(BLAST)

001: MASSSAVSGA TVSSFFTKTS SPSNPSPKLH SSSPLFPQKT VFQGVSLEDS KKSVSEIFAL SDRKIGGLNV SRRFEIKART AASKTIEVEV DKPLGLTLGQ
101: KQGGGVVITG VEGGGNAAKA GLKSGDQVLY TSSFFGDELW PADKLGFTKT AIQAKPDSVY FVISRGGADV DVKKLNKRPA PPRFGRKLTE TQKATTHICL
201: DCGFIYTLPK PFDEQPDTYV CPQCIAPKKR FARYDVNTGK AIGGGLPPIG VIVGLLAGLG AVGALLVYGL Q

Best Arabidopsis Sequence Match ( AT5G17170.1 )
(BLAST)

001: MATSGAISGA TVSSFFTKTT TTSNPSPKLH SSASLLSQKT VFQGVSLEDS KKSVSEIFAV SERKIGGLNG LRRFEIKARA AASKTIEVEV DKPLGLTLGQ
101: KQGGGVVITG VDGGGNAAKA GLKSGDQVVY TSSFFGDELW PADKLGFTKT AIQAKPDSVY FVVSRGAEVD VKKLNKRPAP PRFGRKLTET QKARATHICL
201: DCGFIYTLPK SFDEQPDTYV CPQCIAPKKR FAKYDVNTGK AIGGGLPPIG VIVGLLAGLG AVGALLVYGL Q

Arabidopsis Description

ENH1Rubredoxin family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.