Factsheet for VIT_16s0039g02540.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_10s0003g01830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17170.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT5G17170.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P00390_001	Banana	plastid	44.78	62.5
Bra008575.1-P	Field mustard	cytosol	43.66	61.58
CDX69400	Canola	cytosol	43.66	61.58
Os08t0162600-01	Rice	plastid	57.09	58.85
CDY02732	Canola	plastid	58.21	57.78
CDY16955	Canola	plastid	52.99	57.72
PGSC0003DMT400001532	Potato	plastid	59.7	57.55
Solyc03g096850.2.1	Tomato	plastid	59.7	57.55
Bra023597.1-P	Field mustard	plastid	57.84	57.2
CDX85473	Canola	plastid	57.84	57.2
AT5G17170.1	Thale cress	plastid	56.72	56.09
TraesCS7D01G293100.1	Wheat	plastid	53.36	55.21
TraesCS7B01G189500.2	Wheat	plastid	52.99	54.83
TraesCS7A01G294700.1	Wheat	plastid	52.61	54.44
KRH58254	Soybean	plastid	32.46	47.28
HORVU7Hr1G067110.3	Barley	plastid	53.36	47.04
OQU79958	Sorghum	plastid	56.34	45.21
Zm00001d024519_P005	Maize	cytosol	52.24	39.22
GSMUA_Achr3P00400_001	Banana	extracellular, plasma membrane	5.22	17.5
VIT_16s0039g02530.t01	Wine grape	cytosol, extracellular, plasma membrane	2.99	13.11

Protein Annotations

ArrayExpress:VIT_16s0039g02540	EMBL:FN595750	EnsemblPlants:VIT_16s0039g02540.t01	EnsemblPlantsGene:VIT_16s0039g02540	Gene3D:2.30.42.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001478
InterPro:PDZ	InterPro:PDZ_sf	PANTHER:PTHR45293	PFscan:PS50106	ProteinID:CCB50619	ProteinID:CCB50619.1
SEG:seg	SUPFAM:SSF50156	UniParc:UPI00021095FB	UniProt:F6HEH3	MapMan:35.2	:

Description

No Description!

Coordinates

chr16:-:2776365..2778720

Molecular Weight (calculated)

28792.2 Da

IEP (calculated)

10.531

GRAVY (calculated)

-0.363

Length

268 amino acids

Sequence
(BLAST)

001: MASAVVAGTS SSCSAAFTRT HSIKPSSTPP PKPLTPSQSQ KTTFQGLSLQ DAKRGFSNSV LAADSRSSFA SVRRGLEITA RTAGAAKNIE VEVDKPLGLT
101: LGQKSGGGVV ITAVEGGGNA AKAGLKAGDQ VLYTSSFFGD ELWPADKLGF TKTAIQAKPD SVYFVVSRGA EVDVKRLPKR PAPPRFGRKL TEAQKARATH
201: ICLDCGFIYT LTKPFEEQIR LLHKCFKNRK ASVSQDKTIF EWQQQHSAVT PANWKLFNSI TDTEGRNS

Best Arabidopsis Sequence Match ( AT5G17170.1 )
(BLAST)

001: MATSGAISGA TVSSFFTKTT TTSNPSPKLH SSASLLSQKT VFQGVSLEDS KKSVSEIFAV SERKIGGLNG LRRFEIKARA AASKTIEVEV DKPLGLTLGQ
101: KQGGGVVITG VDGGGNAAKA GLKSGDQVVY TSSFFGDELW PADKLGFTKT AIQAKPDSVY FVVSRGAEVD VKKLNKRPAP PRFGRKLTET QKARATHICL
201: DCGFIYTLPK SFDEQPDTYV CPQCIAPKKR FAKYDVNTGK AIGGGLPPIG VIVGLLAGLG AVGALLVYGL Q

Arabidopsis Description

ENH1Rubredoxin family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.