Factsheet for Solyc03g096850.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g071920.2.1
Solyc03g005980.2.1
Solyc05g015640.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17170.1	Solyc05g015640.2.1	AT1G27300.1	21798944
AT5G17170.1	Solyc02g071920.2.1	AT4G19030.1	21798944
AT5G17170.1	Solyc03g005980.2.1	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001532	Potato	plastid	97.84	97.84
Bra008575.1-P	Field mustard	cytosol	50.0	73.16
CDX69400	Canola	cytosol	50.0	73.16
KRH77719	Soybean	nucleus, plastid	71.58	72.63
AT5G17170.1	Thale cress	plastid	67.63	69.37
CDY16955	Canola	plastid	61.15	69.11
CDX85473	Canola	plastid	67.27	69.0
Os08t0162600-01	Rice	plastid	64.39	68.85
Bra023597.1-P	Field mustard	plastid	66.55	68.27
CDY02732	Canola	plastid	66.19	68.15
TraesCS7D01G293100.1	Wheat	plastid	62.23	66.8
TraesCS7B01G189500.2	Wheat	plastid	61.87	66.41
TraesCS7A01G294700.1	Wheat	plastid	61.87	66.41
GSMUA_Achr3P00400_001	Banana	extracellular, plasma membrane	17.27	60.0
VIT_16s0039g02540.t01	Wine grape	plastid	57.55	59.7
GSMUA_Achr3P00390_001	Banana	plastid	41.01	59.38
HORVU7Hr1G067110.3	Barley	plastid	60.79	55.59
KRH27766	Soybean	nucleus	71.58	55.28
OQU79958	Sorghum	plastid	62.95	52.4
Zm00001d024519_P005	Maize	cytosol	63.31	49.3
KRH58254	Soybean	plastid	29.86	45.11

Protein Annotations

Gene3D:2.20.28.10	Gene3D:2.30.42.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005506
GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR001478	InterPro:IPR024934
UniProt:K4BJA3	InterPro:PDZ	InterPro:PDZ_sf	PFscan:PS50106	PFscan:PS50903	PANTHER:PTHR45293
InterPro:Rubredoxin-like_dom	SUPFAM:SSF50156	SUPFAM:SSF57802	EnsemblPlantsGene:Solyc03g096850.2	EnsemblPlants:Solyc03g096850.2.1	TMHMM:TMhelix
UniParc:UPI0002767FC2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:59230646..59233381

Molecular Weight (calculated)

29011.7 Da

IEP (calculated)

10.094

GRAVY (calculated)

-0.148

Length

278 amino acids

Sequence
(BLAST)

001: MASAVVAGAA SSSCSVSYSR NLSITKSNSS IPSLKSSTTP SQRTSFQGLS LQEAKRGVSN TFLGAESKRN ATSNGGSRGL EITARKAAAA KNIEVEVDKP
101: LGLTLGPKQG GGVLITGIDN GGNAARAGLK VGDQVVYTSS FFGDELWPAD KLGFTKTAIQ AKPDSVYFVI SRGADVDVKR LPKRPAPPQF GRKLTDAQKA
201: RATHICLDCG YIYTLPKSFD EQPEDYACPQ CIAPKKRFAR YDVNTGRAIG GGLPPIGVII GLIAGIGGVG ALLVYGLQ

Best Arabidopsis Sequence Match ( AT5G17170.1 )
(BLAST)

001: MATSGAISGA TVSSFFTKTT TTSNPSPKLH SSASLLSQKT VFQGVSLEDS KKSVSEIFAV SERKIGGLNG LRRFEIKARA AASKTIEVEV DKPLGLTLGQ
101: KQGGGVVITG VDGGGNAAKA GLKSGDQVVY TSSFFGDELW PADKLGFTKT AIQAKPDSVY FVVSRGAEVD VKKLNKRPAP PRFGRKLTET QKARATHICL
201: DCGFIYTLPK SFDEQPDTYV CPQCIAPKKR FAKYDVNTGK AIGGGLPPIG VIVGLLAGLG AVGALLVYGL Q

Arabidopsis Description

ENH1Rubredoxin family protein [Source:UniProtKB/TrEMBL;Acc:Q9FFJ2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.