Factsheet for PGSC0003DMT400000359

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 4
cytosol 3
mitochondrion 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400084737

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61870.1	PGSC0003DMT400084737	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g096240.2.1	Tomato	plastid	96.74	96.74
VIT_15s0048g02980.t01	Wine grape	plastid	73.19	73.99
GSMUA_Achr1P18690_001	Banana	cytosol	55.07	72.04
KRG97220	Soybean	plastid	69.57	69.31
CDY57873	Canola	plastid	64.49	65.44
KRH06415	Soybean	plastid	64.13	65.07
Bra007634.1-P	Field mustard	plastid	64.49	64.96
CDX71700	Canola	plastid	63.77	64.47
KRH68940	Soybean	nucleus	54.35	64.38
AT3G61870.1	Thale cress	plastid	63.41	64.34
GSMUA_Achr3P13860_001	Banana	plastid	65.94	64.31
Os02t0122500-00	Rice	plastid	59.42	58.78
EES06198	Sorghum	plastid	59.42	56.75
TraesCS6A01G066100.1	Wheat	plastid	56.52	56.52
TraesCS6B01G089400.1	Wheat	plastid	56.88	56.07
TraesCSU01G117800.1	Wheat	plastid	56.16	55.96
Zm00001d053925_P001	Maize	plastid	57.25	54.67

Protein Annotations

EnsemblPlants:PGSC0003DMT400000359	EnsemblPlantsGene:PGSC0003DMG400000125	EntrezGene:102594273	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF4079	PANTHER:PTHR34679	PANTHER:PTHR34679:SF2	PFAM:PF13301	PGSC:PGSC0003DMG400000125	RefSeq:XP_006339751.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002961C93	UniProt:M0ZGL4	MapMan:35.2	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400000125]

Coordinates

chr1:+:73817235..73820845

Molecular Weight (calculated)

30559.4 Da

IEP (calculated)

9.657

GRAVY (calculated)

0.122

Length

276 amino acids

Sequence
(BLAST)

001: MAATLSLLKL PILPSKPKFK ISIPSCKHSP VTLLPQQCHQ DSYNPQKLLL HDTIEQLKSA SLPLTALTFP FFLDAQDAFA AGGEFGIFEG RSFALIHPIV
101: MSGLFVYTLY AGYLGWQWRR VRTIQNEINE LKKEVKPVTV TPEGTPIENP KPSPVEAKIQ QLTEERKELI KGSFRDRHFN AGSILLGFGV TEAIFGGLNT
201: WLRTGKLFPG PHLFAGAGIT VLWAAAAALV PAMQKGNETA RSLHIALNAL NVILFVWQIP TGIDIVFKVF EFTNWP

Best Arabidopsis Sequence Match ( AT3G61870.1 )
(BLAST)

001: MATTLHCLST LHLLPRTHHP KTLNSLKPIT TKSQPCKTPE IPSTPNALQL LKSSSLPLAV IALPFFLDPQ DAAAAGGEFG ILEGRSFALI HPIVMGGLFA
101: YTLWTGYLGW QWRRVRTIQS EISDLKKQLK PTPVSPDGST AVDSSSPPST TELQIQRLTE ERKELVKGSY RDKHFDAGSV LLGFGVLEAV FGGVNTYLRT
201: GKLFPGPHLY AGAGITVLWA AAAALVPAMQ KGNDTARSLH IALNAVNVLL FIWQIPTGLD IVLKVFEFTK WP

Arabidopsis Description

AT3g61870/F21F14_40 [Source:UniProtKB/TrEMBL;Acc:Q9M277]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.