Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plasma membrane 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P13860_001 | Banana | plastid | 80.09 | 59.72 |
| VIT_15s0048g02980.t01 | Wine grape | plastid | 73.93 | 57.14 |
| KRH06415 | Soybean | plastid | 72.51 | 56.25 |
| KRG97220 | Soybean | plastid | 72.51 | 55.23 |
| PGSC0003DMT400000359 | Potato | cytosol | 72.04 | 55.07 |
| Solyc01g096240.2.1 | Tomato | plastid | 71.09 | 54.35 |
| Os02t0122500-00 | Rice | plastid | 70.62 | 53.41 |
| CDY57873 | Canola | plastid | 68.25 | 52.94 |
| CDX71700 | Canola | plastid | 68.25 | 52.75 |
| AT3G61870.1 | Thale cress | plastid | 67.77 | 52.57 |
| Bra007634.1-P | Field mustard | plastid | 68.25 | 52.55 |
| TraesCS6A01G066100.1 | Wheat | plastid | 67.77 | 51.81 |
| TraesCSU01G117800.1 | Wheat | plastid | 67.3 | 51.26 |
| EES06198 | Sorghum | plastid | 70.14 | 51.21 |
| TraesCS6B01G089400.1 | Wheat | plastid | 67.3 | 50.71 |
| Zm00001d053925_P001 | Maize | plastid | 69.19 | 50.52 |
| KRH68940 | Soybean | nucleus | 51.18 | 46.35 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P18690_001 | EnsemblPlants:GSMUA_Achr1T18690_001 | EnsemblPlantsGene:GSMUA_Achr1G18690_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:DUF4079 | PANTHER:PTHR34679 | PANTHER:PTHR34679:SF2 | PFAM:PF13301 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000295D33B | UniProt:M0S127 | MapMan:35.2 | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G18690_001]
Coordinates
chr1:-:13973356..13977078
Molecular Weight (calculated)
22876.7 Da
IEP (calculated)
7.673
GRAVY (calculated)
0.181
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFPGWKDAL ALDGEFGILE GRTFALVHPV VMGGLFFYTL WAGYLGWQWR RVRTIQNEIN ELKQAAPAAP MTIAAGSDAE ASPPASPTPA EAKIQQLTEE
101: RKALLKGSYR ERHYNAGSIL LGFGVLEAVG GCLNTWIRTG QLFPGPHLFG GAGITALWAL AASLVPAMQK GNDAARNLHI ALNTLNVLLF VSQIPTGIDI
201: VFKVFEFTNW P
101: RKALLKGSYR ERHYNAGSIL LGFGVLEAVG GCLNTWIRTG QLFPGPHLFG GAGITALWAL AASLVPAMQK GNDAARNLHI ALNTLNVLLF VSQIPTGIDI
201: VFKVFEFTNW P
001: MATTLHCLST LHLLPRTHHP KTLNSLKPIT TKSQPCKTPE IPSTPNALQL LKSSSLPLAV IALPFFLDPQ DAAAAGGEFG ILEGRSFALI HPIVMGGLFA
101: YTLWTGYLGW QWRRVRTIQS EISDLKKQLK PTPVSPDGST AVDSSSPPST TELQIQRLTE ERKELVKGSY RDKHFDAGSV LLGFGVLEAV FGGVNTYLRT
201: GKLFPGPHLY AGAGITVLWA AAAALVPAMQ KGNDTARSLH IALNAVNVLL FIWQIPTGLD IVLKVFEFTK WP
101: YTLWTGYLGW QWRRVRTIQS EISDLKKQLK PTPVSPDGST AVDSSSPPST TELQIQRLTE ERKELVKGSY RDKHFDAGSV LLGFGVLEAV FGGVNTYLRT
201: GKLFPGPHLY AGAGITVLWA AAAALVPAMQ KGNDTARSLH IALNAVNVLL FIWQIPTGLD IVLKVFEFTK WP
Arabidopsis Description
AT3g61870/F21F14_40 [Source:UniProtKB/TrEMBL;Acc:Q9M277]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.