CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 3
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH31520
KRH76090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61870.1	KRG97393	AT1G27300.1	21798944
AT3G61870.1	KRH31520	AT1G27300.1	21798944
AT3G61870.1	KRH76090	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97220	Soybean	plastid	82.83	69.68
VIT_15s0048g02980.t01	Wine grape	plastid	64.38	54.95
KRH06415	Soybean	plastid	63.95	54.78
Solyc01g096240.2.1	Tomato	plastid	64.38	54.35
PGSC0003DMT400000359	Potato	cytosol	64.38	54.35
GSMUA_Achr1P18690_001	Banana	cytosol	46.35	51.18
GSMUA_Achr3P13860_001	Banana	plastid	60.94	50.18
AT3G61870.1	Thale cress	plastid	56.22	48.16
CDY57873	Canola	plastid	56.22	48.16
Bra007634.1-P	Field mustard	plastid	56.22	47.81
CDX71700	Canola	plastid	55.36	47.25
EES06198	Sorghum	plastid	54.51	43.94
Os02t0122500-00	Rice	plastid	52.36	43.73
TraesCS6A01G066100.1	Wheat	plastid	50.21	42.39
Zm00001d053925_P001	Maize	plastid	52.36	42.21
TraesCS6B01G089400.1	Wheat	plastid	50.21	41.79
TraesCSU01G117800.1	Wheat	plastid	48.07	40.43

Protein Annotations

EMBL:ACUP02002128	EnsemblPlants:KRH68940	EnsemblPlantsGene:GLYMA_03G259400	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF4079	PANTHER:PTHR34679	PANTHER:PTHR34679:SF2	PFAM:PF13301	ProteinID:KRH68940	ProteinID:KRH68940.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0006ED7B3C	UniProt:A0A0R0KPJ9	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr3:+:45363396..45365206

Molecular Weight (calculated)

25818.7 Da

IEP (calculated)

10.378

GRAVY (calculated)

0.020

Length

233 amino acids

Sequence
(BLAST)

001: MAATLTLLKL PILPNKPLLP RPSTSKLFPL PSIYSKLNIP KDYIVSPNNI DALKPAFLSL SAITFPLLLE TKDALAVGGE FGILEGRSFA LIHPIVMGSF
101: FLYTLWAGYL GWQWRRVRTI QNDINDLKKQ VKPTPVTPDG KPVEEASPSP VELQIQQLTE ERKELIKGSY KDRHFNAGSI LLGFGVLESI GGGVNTWFRT
201: GKLFPGPHLF AGAAITVLWE TSRVAWTINA KRK

Best Arabidopsis Sequence Match ( AT3G61870.2 )
(BLAST)

001: MATTLHCLST LHLLPRTHHP KTLNSLKPIT TKSQPCKTPE IPSTPNALQL LKSSSLPLAV IALPFFLDPQ DAAAAGGEFG ILEGRSFALI HPIVMGGLFA
101: YTLWTGYLGW QWRRVRTIQS EISDLKKQLK PTPVSPDGST AVDSSSPPST TELQIQRLTE ERKELVKGSY RDKHFDAGSV LLGFGVLEAV FGGVNTYLRT
201: GKLFPGPHLY AGAGTLNLSL VLFFISLILG SNLSKCVILG CLVRFWLGLM WFKF

Arabidopsis Description

AT3g61870/F21F14_40 [Source:UniProtKB/TrEMBL;Acc:Q9M277]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.