Factsheet for Zm00001d053925_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

plastid: 20089766
plastid: 22065420
plastid: 23198870

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d016570_P001
Zm00001d050563_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61870.1	Zm00001d016570_P001	AT1G27300.1	21798944
AT3G61870.1	Zm00001d050563_P001	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES06198	Sorghum	plastid	78.2	78.2
Os02t0122500-00	Rice	plastid	70.24	72.76
GSMUA_Achr1P18690_001	Banana	cytosol	50.52	69.19
TraesCS6A01G066100.1	Wheat	plastid	65.4	68.48
TraesCSU01G117800.1	Wheat	plastid	65.4	68.23
TraesCS6B01G089400.1	Wheat	plastid	65.4	67.5
GSMUA_Achr3P13860_001	Banana	plastid	59.52	60.78
KRG97220	Soybean	plastid	56.75	59.21
VIT_15s0048g02980.t01	Wine grape	plastid	55.71	58.97
Solyc01g096240.2.1	Tomato	plastid	55.02	57.61
PGSC0003DMT400000359	Potato	cytosol	54.67	57.25
AT3G61870.1	Thale cress	plastid	53.29	56.62
CDX71700	Canola	plastid	52.94	56.04
CDY57873	Canola	plastid	52.25	55.51
KRH06415	Soybean	plastid	51.9	55.15
Bra007634.1-P	Field mustard	plastid	52.25	55.11
KRH68940	Soybean	nucleus	42.21	52.36
VIT_11s0149g00360.t01	Wine grape	cytosol	10.73	47.69

Protein Annotations

EMBL:EU972787	EnsemblPlants:Zm00001d053925_P001	EnsemblPlants:Zm00001d053925_T001	EnsemblPlantsGene:Zm00001d053925	EntrezGene:100275485	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:DUF4079	PANTHER:PTHR34679	PANTHER:PTHR34679:SF2	PFAM:PF13301
ProteinID:AQK60745.1	SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI000182EF7E	UniProt:B6U6C2
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:243689888..243690757

Molecular Weight (calculated)

30188.9 Da

IEP (calculated)

10.661

GRAVY (calculated)

0.275

Length

289 amino acids

Sequence
(BLAST)

001: MAAPLTAVRA RLLLLPVTCT AAGTTGRPAP PSKSSRPRLL PPGTTRCRCS RPPMEAVAPV SAAAVAALLL LPADAALAVG GELGILEGRS FALLHPLIMG
101: GLFAYTLWAG YLGWQWRRVR TVQDEINALK KQLKPAAAAT PAAVGAGADS SSTTTPPPAA ASKSPSPAEA RIEELTDERK ALLKGSFRDR HFNAGSLLLG
201: LGVLESVGGA LNTWFRTGKL FPGPHLFAGA AITVLWAAAA ALVPAMQKGD ETARSLHIAL NAVNVLLFVW QIPTGLEIVG KVFEFTTWP

Best Arabidopsis Sequence Match ( AT3G61870.1 )
(BLAST)

001: MATTLHCLST LHLLPRTHHP KTLNSLKPIT TKSQPCKTPE IPSTPNALQL LKSSSLPLAV IALPFFLDPQ DAAAAGGEFG ILEGRSFALI HPIVMGGLFA
101: YTLWTGYLGW QWRRVRTIQS EISDLKKQLK PTPVSPDGST AVDSSSPPST TELQIQRLTE ERKELVKGSY RDKHFDAGSV LLGFGVLEAV FGGVNTYLRT
201: GKLFPGPHLY AGAGITVLWA AAAALVPAMQ KGNDTARSLH IALNAVNVLL FIWQIPTGLD IVLKVFEFTK WP

Arabidopsis Description

AT3g61870/F21F14_40 [Source:UniProtKB/TrEMBL;Acc:Q9M277]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.