Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G346700.1 | |
| TraesCS2B01G365000.1 | |
| TraesCS2D01G345400.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G61870.1 | TraesCS2A01G346700.1 | AT1G27300.1 | 21798944 |
| AT3G61870.1 | TraesCS2B01G365000.1 | AT1G27300.1 | 21798944 |
| AT3G61870.1 | TraesCS2D01G345400.1 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G066100.1 | Wheat | plastid | 94.22 | 94.57 |
| TraesCS6B01G089400.1 | Wheat | plastid | 93.86 | 92.86 |
| Os02t0122500-00 | Rice | plastid | 75.09 | 74.55 |
| GSMUA_Achr1P18690_001 | Banana | cytosol | 51.26 | 67.3 |
| EES06198 | Sorghum | plastid | 68.59 | 65.74 |
| Zm00001d053925_P001 | Maize | plastid | 68.23 | 65.4 |
| VIT_15s0048g02980.t01 | Wine grape | plastid | 61.73 | 62.64 |
| GSMUA_Achr3P13860_001 | Banana | plastid | 61.01 | 59.72 |
| CDY57873 | Canola | plastid | 55.6 | 56.62 |
| Solyc01g096240.2.1 | Tomato | plastid | 56.32 | 56.52 |
| CDX71700 | Canola | plastid | 55.6 | 56.41 |
| AT3G61870.1 | Thale cress | plastid | 55.23 | 56.25 |
| Bra007634.1-P | Field mustard | plastid | 55.6 | 56.2 |
| PGSC0003DMT400000359 | Potato | cytosol | 55.96 | 56.16 |
| KRH06415 | Soybean | plastid | 54.51 | 55.51 |
| KRG97220 | Soybean | plastid | 54.87 | 54.87 |
| VIT_11s0149g00360.t01 | Wine grape | cytosol | 11.55 | 49.23 |
| KRH68940 | Soybean | nucleus | 40.43 | 48.07 |
Protein Annotations
| EnsemblPlants:TraesCSU01G117800.1 | EnsemblPlantsGene:TraesCSU01G117800 | InterPro:DUF4079 | PANTHER:PTHR34679 | PANTHER:PTHR34679:SF2 | PFAM:PF13301 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrUn:-:101393247..101394200
Molecular Weight (calculated)
28810.0 Da
IEP (calculated)
10.688
GRAVY (calculated)
0.197
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPMASPLT AVARAARVHP VSCSASSSSA KNPKQSSSSS SSPPAVPSLR STAVALAGAV PLLAALPPPD AMAVGGELGI IEGRTVALLH PAIMGGLFAY
101: TLWAGYLGWQ WRRVRTVQDE ITELKKQVRP AAAATPAAVG AGDSAPPPPP AAKSPTEIKI NELTEERKKL VKGGFRDRHF NAGSILLGLG VTESVGGALN
201: TWLRTGKLFP GPHLFAGAAI TVLWAAAAAL VPAMQKGNET ARSLHIALNT INVLLFIWQI PTGLEIVGKV FEFTNWP
101: TLWAGYLGWQ WRRVRTVQDE ITELKKQVRP AAAATPAAVG AGDSAPPPPP AAKSPTEIKI NELTEERKKL VKGGFRDRHF NAGSILLGLG VTESVGGALN
201: TWLRTGKLFP GPHLFAGAAI TVLWAAAAAL VPAMQKGNET ARSLHIALNT INVLLFIWQI PTGLEIVGKV FEFTNWP
001: MATTLHCLST LHLLPRTHHP KTLNSLKPIT TKSQPCKTPE IPSTPNALQL LKSSSLPLAV IALPFFLDPQ DAAAAGGEFG ILEGRSFALI HPIVMGGLFA
101: YTLWTGYLGW QWRRVRTIQS EISDLKKQLK PTPVSPDGST AVDSSSPPST TELQIQRLTE ERKELVKGSY RDKHFDAGSV LLGFGVLEAV FGGVNTYLRT
201: GKLFPGPHLY AGAGITVLWA AAAALVPAMQ KGNDTARSLH IALNAVNVLL FIWQIPTGLD IVLKVFEFTK WP
101: YTLWTGYLGW QWRRVRTIQS EISDLKKQLK PTPVSPDGST AVDSSSPPST TELQIQRLTE ERKELVKGSY RDKHFDAGSV LLGFGVLEAV FGGVNTYLRT
201: GKLFPGPHLY AGAGITVLWA AAAALVPAMQ KGNDTARSLH IALNAVNVLL FIWQIPTGLD IVLKVFEFTK WP
Arabidopsis Description
AT3g61870/F21F14_40 [Source:UniProtKB/TrEMBL;Acc:Q9M277]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.