Factsheet for Bra007634.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra030034.1-P
Bra032817.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61870.1	Bra030034.1-P	AT1G27300.1	21798944
AT3G61870.1	Bra032817.1-P	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY57873	Canola	plastid	99.27	100.0
AT3G61870.1	Thale cress	plastid	84.31	84.93
GSMUA_Achr1P18690_001	Banana	cytosol	52.55	68.25
PGSC0003DMT400000359	Potato	cytosol	64.96	64.49
Solyc01g096240.2.1	Tomato	plastid	64.6	64.13
VIT_15s0048g02980.t01	Wine grape	plastid	63.87	64.1
KRG97220	Soybean	plastid	62.41	61.73
KRH06415	Soybean	plastid	59.85	60.29
GSMUA_Achr3P13860_001	Banana	plastid	62.04	60.07
Os02t0122500-00	Rice	plastid	59.12	58.06
TraesCS6A01G066100.1	Wheat	plastid	56.93	56.52
KRH68940	Soybean	nucleus	47.81	56.22
TraesCS6B01G089400.1	Wheat	plastid	56.93	55.71
TraesCSU01G117800.1	Wheat	plastid	56.2	55.6
EES06198	Sorghum	plastid	57.3	54.33
Zm00001d053925_P001	Maize	plastid	55.11	52.25

Protein Annotations

MapMan:35.2	EnsemblPlantsGene:Bra007634	EnsemblPlants:Bra007634.1	EnsemblPlants:Bra007634.1-P	InterPro:DUF4079	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009534	GO:GO:0009536
GO:GO:0009579	GO:GO:0009706	GO:GO:0009941	GO:GO:0016020	GO:GO:0016021	UniProt:M4CTU0
PFAM:PF13301	PANTHER:PTHR34679	PANTHER:PTHR34679:SF2	TMHMM:TMhelix	UniParc:UPI0002542A40	SEG:seg

Description

AT3G61870 (E=3e-087) | unknown protein

Coordinates

chrA09:+:30177441..30178791

Molecular Weight (calculated)

29823.5 Da

IEP (calculated)

10.159

GRAVY (calculated)

0.094

Length

274 amino acids

Sequence
(BLAST)

001: MATTLHCLST LHLLPRTTHR PKTLNSLKPA SKAQPPKIPE LPSIPNALQL LKSSSLPLAL TALPFLIDPQ DAAAAGGQFG ILEGRSFALI HPIVMGGLFV
101: YTLYAGYLGW QWRRVRTIQS EINELKKQVK PTPVSPDGST VVDSSSPPSA TELEIRRLTE ERKELVKGSY RDKHFDAGSV LLGFGLGVLE SVFGGLNTYL
201: RTGKLFPGPH LYAGAGITVL WAAAAALVPA MQKGNETARN LHIALNGLNV LLFIWQIPTG FDIVLKVFEF TKWP

Best Arabidopsis Sequence Match ( AT3G61870.1 )
(BLAST)

001: MATTLHCLST LHLLPRTHHP KTLNSLKPIT TKSQPCKTPE IPSTPNALQL LKSSSLPLAV IALPFFLDPQ DAAAAGGEFG ILEGRSFALI HPIVMGGLFA
101: YTLWTGYLGW QWRRVRTIQS EISDLKKQLK PTPVSPDGST AVDSSSPPST TELQIQRLTE ERKELVKGSY RDKHFDAGSV LLGFGVLEAV FGGVNTYLRT
201: GKLFPGPHLY AGAGITVLWA AAAALVPAMQ KGNDTARSLH IALNAVNVLL FIWQIPTGLD IVLKVFEFTK WP

Arabidopsis Description

AT3g61870/F21F14_40 [Source:UniProtKB/TrEMBL;Acc:Q9M277]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.