CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84933
CDY03907
CDY15722
CDY27605

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61870.1	CDX84933	AT1G27300.1	21798944
AT3G61870.1	CDY03907	AT1G27300.1	21798944
AT3G61870.1	CDY15722	AT1G27300.1	21798944
AT3G61870.1	CDY27605	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra007634.1-P	Field mustard	plastid	100.0	99.27
CDX71700	Canola	plastid	93.75	93.41
AT3G61870.1	Thale cress	plastid	84.93	84.93
GSMUA_Achr1P18690_001	Banana	cytosol	52.94	68.25
PGSC0003DMT400000359	Potato	cytosol	65.44	64.49
Solyc01g096240.2.1	Tomato	plastid	65.07	64.13
VIT_15s0048g02980.t01	Wine grape	plastid	64.34	64.1
KRG97220	Soybean	plastid	62.87	61.73
KRH06415	Soybean	plastid	60.29	60.29
GSMUA_Achr3P13860_001	Banana	plastid	62.5	60.07
Os02t0122500-00	Rice	plastid	59.56	58.06
TraesCS6A01G066100.1	Wheat	plastid	57.35	56.52
KRH68940	Soybean	nucleus	48.16	56.22
TraesCS6B01G089400.1	Wheat	plastid	57.35	55.71
TraesCSU01G117800.1	Wheat	plastid	56.62	55.6
EES06198	Sorghum	plastid	57.72	54.33
Zm00001d053925_P001	Maize	plastid	55.51	52.25

Protein Annotations

EnsemblPlants:CDY57873	EnsemblPlantsGene:GSBRNA2T00022774001	GO:A0A078J2U0	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF4079	PANTHER:PTHR34679	PANTHER:PTHR34679:SF2	PFAM:PF13301	ProteinID:CDY57873	ProteinID:CDY57873.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE5174	UniProt:A0A078J2U0	MapMan:35.2	:

Description

BnaA09g55550DBnaA09g55550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J2U0]

Coordinates

chrLK033612:-:24941..26643

Molecular Weight (calculated)

29653.3 Da

IEP (calculated)

10.159

GRAVY (calculated)

0.082

Length

272 amino acids

Sequence
(BLAST)

001: MATTLHCLST LHLLPRTTHR PKTLNSLKPA SKAQPPKIPE LPSIPNALQL LKSSSLPLAL TALPFLIDPQ DAAAAGGQFG ILEGRSFALI HPIVMGGLFV
101: YTLYAGYLGW QWRRVRTIQS EINELKKQVK PTPVSPDGST VVDSSSPPSA TELEIRRLTE ERKELVKGSY RDKHFDAGSV LLGFGVLESV FGGLNTYLRT
201: GKLFPGPHLY AGAGITVLWA AAAALVPAMQ KGNETARNLH IALNGLNVLL FIWQIPTGFD IVLKVFEFTK WP

Best Arabidopsis Sequence Match ( AT3G61870.1 )
(BLAST)

001: MATTLHCLST LHLLPRTHHP KTLNSLKPIT TKSQPCKTPE IPSTPNALQL LKSSSLPLAV IALPFFLDPQ DAAAAGGEFG ILEGRSFALI HPIVMGGLFA
101: YTLWTGYLGW QWRRVRTIQS EISDLKKQLK PTPVSPDGST AVDSSSPPST TELQIQRLTE ERKELVKGSY RDKHFDAGSV LLGFGVLEAV FGGVNTYLRT
201: GKLFPGPHLY AGAGITVLWA AAAALVPAMQ KGNDTARSLH IALNAVNVLL FIWQIPTGLD IVLKVFEFTK WP

Arabidopsis Description

AT3g61870/F21F14_40 [Source:UniProtKB/TrEMBL;Acc:Q9M277]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.