Factsheet for VIT_15s0048g02980.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 3
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61870.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P18690_001	Banana	cytosol	57.14	73.93
PGSC0003DMT400000359	Potato	cytosol	73.99	73.19
Solyc01g096240.2.1	Tomato	plastid	73.63	72.83
KRG97220	Soybean	plastid	69.96	68.95
GSMUA_Achr3P13860_001	Banana	plastid	69.23	66.78
KRH06415	Soybean	plastid	65.93	66.18
KRH68940	Soybean	nucleus	54.95	64.38
CDY57873	Canola	plastid	64.1	64.34
Bra007634.1-P	Field mustard	plastid	64.1	63.87
CDX71700	Canola	plastid	63.37	63.37
AT3G61870.1	Thale cress	plastid	62.27	62.5
TraesCS6B01G089400.1	Wheat	plastid	64.1	62.5
TraesCS6A01G066100.1	Wheat	plastid	63.0	62.32
TraesCSU01G117800.1	Wheat	plastid	62.64	61.73
EES06198	Sorghum	plastid	63.74	60.21
VIT_11s0149g00360.t01	Wine grape	cytosol	14.29	60.0
Os02t0122500-00	Rice	plastid	61.17	59.86
Zm00001d053925_P001	Maize	plastid	58.97	55.71

Protein Annotations

EntrezGene:100250645	wikigene:100250645	MapMan:35.2	ProteinID:CBI38681	ProteinID:CBI38681.3	UniProt:D7U7Z9
InterPro:DUF4079	EMBL:FN596739	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100250645
wikigene:LOC100250645	PFAM:PF13301	PANTHER:PTHR34679	PANTHER:PTHR34679:SF2	TIGR:TC67175	TMHMM:TMhelix
UniParc:UPI00015CA6E8	ArrayExpress:VIT_15s0048g02980	EnsemblPlantsGene:VIT_15s0048g02980	EnsemblPlants:VIT_15s0048g02980.t01	unigene:Vvi.5516	RefSeq:XP_002262754
RefSeq:XP_002262754.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr15:-:17080547..17082000

Molecular Weight (calculated)

30093.7 Da

IEP (calculated)

10.683

GRAVY (calculated)

0.075

Length

273 amino acids

Sequence
(BLAST)

001: MATTLSLLRL SIVSQKSHQT HSKLVNRPNP VRSVISQHSL DPQRLLSETT HRLKSAALPL TALTLPFLLD SKDALAVGGE FGILEGRTLA LIHPIVMGSL
101: FFYTLWAGYL GWQWRRVRTI QNEINELKKQ VRPVAVTPEG SPPAEAPPPS PIEAKIQQLT EERKELIKGS FRDRHFNAGS ILLGFGVFES IGGGVNTWFR
201: TGKLFPGPHL FAGAAITALW AAAAALVPAM QKGNETARNL HIALNGLNVL LFIWQIPTGI DIVFKVFEFT NWP

Best Arabidopsis Sequence Match ( AT3G61870.1 )
(BLAST)

001: MATTLHCLST LHLLPRTHHP KTLNSLKPIT TKSQPCKTPE IPSTPNALQL LKSSSLPLAV IALPFFLDPQ DAAAAGGEFG ILEGRSFALI HPIVMGGLFA
101: YTLWTGYLGW QWRRVRTIQS EISDLKKQLK PTPVSPDGST AVDSSSPPST TELQIQRLTE ERKELVKGSY RDKHFDAGSV LLGFGVLEAV FGGVNTYLRT
201: GKLFPGPHLY AGAGITVLWA AAAALVPAMQ KGNDTARSLH IALNAVNVLL FIWQIPTGLD IVLKVFEFTK WP

Arabidopsis Description

AT3g61870/F21F14_40 [Source:UniProtKB/TrEMBL;Acc:Q9M277]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.