Factsheet for Os02t0122500-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
plasma membrane 1
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0509600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61870.1	Os02t0509600-01	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G117800.1	Wheat	plastid	74.55	75.09
EES06198	Sorghum	plastid	77.06	74.39
TraesCS6A01G066100.1	Wheat	plastid	73.48	74.28
TraesCS6B01G089400.1	Wheat	plastid	73.48	73.21
GSMUA_Achr1P18690_001	Banana	cytosol	53.41	70.62
Zm00001d053925_P001	Maize	plastid	72.76	70.24
VIT_15s0048g02980.t01	Wine grape	plastid	59.86	61.17
GSMUA_Achr3P13860_001	Banana	plastid	61.29	60.42
AT3G61870.1	Thale cress	plastid	58.06	59.56
CDY57873	Canola	plastid	58.06	59.56
PGSC0003DMT400000359	Potato	cytosol	58.78	59.42
Solyc01g096240.2.1	Tomato	plastid	58.78	59.42
CDX71700	Canola	plastid	58.06	59.34
Bra007634.1-P	Field mustard	plastid	58.06	59.12
KRG97220	Soybean	plastid	58.42	58.84
KRH06415	Soybean	plastid	54.12	55.51
KRH68940	Soybean	nucleus	43.73	52.36
VIT_11s0149g00360.t01	Wine grape	cytosol	11.11	47.69

Protein Annotations

EnsemblPlants:Os02t0122500-00	EnsemblPlantsGene:Os02g0122500	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:DUF4079
PANTHER:PTHR34679	PANTHER:PTHR34679:SF2	PFAM:PF13301	ProteinID:BAD07943.1	ProteinID:BAS76722.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0000236843	UniProt:Q6Z728	MapMan:35.2	:	:

Description

Conserved hypothetical protein. (Os02t0122500-00)

Coordinates

chr2:-:1185129..1186387

Molecular Weight (calculated)

29178.3 Da

IEP (calculated)

10.426

GRAVY (calculated)

0.177

Length

279 amino acids

Sequence
(BLAST)

001: MMAAPLAAVH AIITCSASNK NSPPSARQQQ QTTTTTATRG SPAALPSLLR TTAAAAATAA LALAPPDALA AGGEFGILEG RSVALLHPLV MGGLFAYTLW
101: AGYLGWQWRR VRTIQDEINE LKKQLKPAAA AATPAAVAAG DSSSSSSSPP PSAPKSPVEI KIDELTEERK KLIKGSFRDR HFNAGSILLG LGVTESVGGA
201: LNTWFRTGKL FPGPHLFAGA AITVLWAAAA ALVPAMQKGN ETARSLHIAL NAINVLLFIW QIPTGLEIVG KVFEFTTWP

Best Arabidopsis Sequence Match ( AT3G61870.1 )
(BLAST)

001: MATTLHCLST LHLLPRTHHP KTLNSLKPIT TKSQPCKTPE IPSTPNALQL LKSSSLPLAV IALPFFLDPQ DAAAAGGEFG ILEGRSFALI HPIVMGGLFA
101: YTLWTGYLGW QWRRVRTIQS EISDLKKQLK PTPVSPDGST AVDSSSPPST TELQIQRLTE ERKELVKGSY RDKHFDAGSV LLGFGVLEAV FGGVNTYLRT
201: GKLFPGPHLY AGAGITVLWA AAAALVPAMQ KGNDTARSLH IALNAVNVLL FIWQIPTGLD IVLKVFEFTK WP

Arabidopsis Description

AT3g61870/F21F14_40 [Source:UniProtKB/TrEMBL;Acc:Q9M277]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.