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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • cytosol 3
  • mitochondrion 2
  • nucleus 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus, plastid
Predotar:mitochondrion
PProwler:plastid
TargetP:plastid
WoLF PSORT:cytosol
YLoc:plasma membrane
 plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc05g015640.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G61870.1 Solyc05g015640.2.1 AT1G27300.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400000359 Potato cytosol 96.74 96.74
VIT_15s0048g02980.t01 Wine grape plastid 72.83 73.63
GSMUA_Achr1P18690_001 Banana cytosol 54.35 71.09
KRG97220 Soybean plastid 69.57 69.31
CDY57873 Canola plastid 64.13 65.07
KRH06415 Soybean plastid 63.77 64.71
Bra007634.1-P Field mustard plastid 64.13 64.6
KRH68940 Soybean nucleus 54.35 64.38
GSMUA_Achr3P13860_001 Banana plastid 65.94 64.31
CDX71700 Canola plastid 63.41 64.1
AT3G61870.1 Thale cress plastid 63.04 63.97
Os02t0122500-00 Rice plastid 59.42 58.78
TraesCS6A01G066100.1 Wheat plastid 56.88 56.88
EES06198 Sorghum plastid 59.42 56.75
TraesCSU01G117800.1 Wheat plastid 56.52 56.32
TraesCS6B01G089400.1 Wheat plastid 56.88 56.07
Zm00001d053925_P001 Maize plastid 57.61 55.02
Protein Annotations
EnsemblPlants:Solyc01g096240.2.1EnsemblPlantsGene:Solyc01g096240.2GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:DUF4079
PANTHER:PTHR34679PANTHER:PTHR34679:SF2PFAM:PF13301SEG:segTMHMM:TMhelixUniParc:UPI0002767899
UniProt:K4B012MapMan:35.2::::
Description
No Description!
Coordinates
chr1:+:87330798..87334376
Molecular Weight (calculated)
30504.4 Da
IEP (calculated)
9.845
GRAVY (calculated)
0.140
Length
276 amino acids
Sequence
(BLAST)
001: MAATLSLLKL PILPSKPKFK ISIPSCKHSP VTLLPQQCHQ DSYNHQKLLL HDTIEQLKSA SLPLTALTLP FFLDAQDAFA AGGEFGIFEG RSFALIHPIV
101: MGGLFVYTLY AGYLGWQWRR VRTIQNEINE LKKEVKPVAV TPEGTPVENP KPSPVEAKIQ QLTEERKELI KGSFRDRHFN AGSILLGFGV SEAIFGGLNT
201: WLRTGKLFPG PHLFAGAGIT VLWAVAAALV PAMQKGNETA RSLHIALNAI NVILFVWQIP TGIDIVFKVF QFTNWP
Best Arabidopsis Sequence Match ( AT3G61870.1 )
(BLAST)
001: MATTLHCLST LHLLPRTHHP KTLNSLKPIT TKSQPCKTPE IPSTPNALQL LKSSSLPLAV IALPFFLDPQ DAAAAGGEFG ILEGRSFALI HPIVMGGLFA
101: YTLWTGYLGW QWRRVRTIQS EISDLKKQLK PTPVSPDGST AVDSSSPPST TELQIQRLTE ERKELVKGSY RDKHFDAGSV LLGFGVLEAV FGGVNTYLRT
201: GKLFPGPHLY AGAGITVLWA AAAALVPAMQ KGNDTARSLH IALNAVNVLL FIWQIPTGLD IVLKVFEFTK WP
Arabidopsis Description
AT3g61870/F21F14_40 [Source:UniProtKB/TrEMBL;Acc:Q9M277]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.