Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- cytosol 1
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G61870.1 | CDX84933 | AT1G27300.1 | 21798944 |
| AT3G61870.1 | CDY03907 | AT1G27300.1 | 21798944 |
| AT3G61870.1 | CDY15722 | AT1G27300.1 | 21798944 |
| AT3G61870.1 | CDY27605 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY57873 | Canola | plastid | 93.41 | 93.75 |
| AT3G61870.1 | Thale cress | plastid | 85.35 | 85.66 |
| GSMUA_Achr1P18690_001 | Banana | cytosol | 52.75 | 68.25 |
| PGSC0003DMT400000359 | Potato | cytosol | 64.47 | 63.77 |
| Solyc01g096240.2.1 | Tomato | plastid | 64.1 | 63.41 |
| VIT_15s0048g02980.t01 | Wine grape | plastid | 63.37 | 63.37 |
| KRG97220 | Soybean | plastid | 62.27 | 61.37 |
| KRH06415 | Soybean | plastid | 60.81 | 61.03 |
| GSMUA_Achr3P13860_001 | Banana | plastid | 60.81 | 58.66 |
| Os02t0122500-00 | Rice | plastid | 59.34 | 58.06 |
| TraesCS6A01G066100.1 | Wheat | plastid | 57.51 | 56.88 |
| TraesCS6B01G089400.1 | Wheat | plastid | 57.51 | 56.07 |
| TraesCSU01G117800.1 | Wheat | plastid | 56.41 | 55.6 |
| KRH68940 | Soybean | nucleus | 47.25 | 55.36 |
| EES06198 | Sorghum | plastid | 56.78 | 53.63 |
| Zm00001d053925_P001 | Maize | plastid | 56.04 | 52.94 |
Protein Annotations
| EnsemblPlants:CDX71700 | EnsemblPlantsGene:GSBRNA2T00155383001 | GO:A0A078C4E1 | InterPro:DUF4079 | PANTHER:PTHR34679 | PANTHER:PTHR34679:SF2 |
| PFAM:PF13301 | ProteinID:CDX71700 | ProteinID:CDX71700.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EDB495 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC08g31740D
Coordinates
chrLK031795:-:27520..29165
Molecular Weight (calculated)
29917.6 Da
IEP (calculated)
10.266
GRAVY (calculated)
0.057
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTLHCLST LHLLPRTIHH RPKTLNSLKP ISKPQPRKTP ELPSIPNALQ LLKSSSLPLA LTALPFLIDP QDAAAAGGQF GILEGRSFAL IHPIVMGGLF
101: VYTLYAGYLG WQWRRVRTIQ SEINELKKQV KPTPVSPDGS TVVDSSSPPS ATELEIRRLT EERKELVKGS YRDKHFDAGS VLLGFGVLES VFGGLNTYLR
201: TGKLFPGPHL YAGAGITVLW AAAAALVPAM QKGNETARNL HIALNGLNVL LFIWQIPTGF DIVLKVFEFT KWP
101: VYTLYAGYLG WQWRRVRTIQ SEINELKKQV KPTPVSPDGS TVVDSSSPPS ATELEIRRLT EERKELVKGS YRDKHFDAGS VLLGFGVLES VFGGLNTYLR
201: TGKLFPGPHL YAGAGITVLW AAAAALVPAM QKGNETARNL HIALNGLNVL LFIWQIPTGF DIVLKVFEFT KWP
001: MATTLHCLST LHLLPRTHHP KTLNSLKPIT TKSQPCKTPE IPSTPNALQL LKSSSLPLAV IALPFFLDPQ DAAAAGGEFG ILEGRSFALI HPIVMGGLFA
101: YTLWTGYLGW QWRRVRTIQS EISDLKKQLK PTPVSPDGST AVDSSSPPST TELQIQRLTE ERKELVKGSY RDKHFDAGSV LLGFGVLEAV FGGVNTYLRT
201: GKLFPGPHLY AGAGITVLWA AAAALVPAMQ KGNDTARSLH IALNAVNVLL FIWQIPTGLD IVLKVFEFTK WP
101: YTLWTGYLGW QWRRVRTIQS EISDLKKQLK PTPVSPDGST AVDSSSPPST TELQIQRLTE ERKELVKGSY RDKHFDAGSV LLGFGVLEAV FGGVNTYLRT
201: GKLFPGPHLY AGAGITVLWA AAAALVPAMQ KGNDTARSLH IALNAVNVLL FIWQIPTGLD IVLKVFEFTK WP
Arabidopsis Description
AT3g61870/F21F14_40 [Source:UniProtKB/TrEMBL;Acc:Q9M277]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.