CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1
plastid 3
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus, plasma membrane
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05123

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61870.1	EES05123	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053925_P001	Maize	plastid	78.2	78.2
Os02t0122500-00	Rice	plastid	74.39	77.06
GSMUA_Achr1P18690_001	Banana	cytosol	51.21	70.14
TraesCS6A01G066100.1	Wheat	plastid	66.78	69.93
TraesCSU01G117800.1	Wheat	plastid	65.74	68.59
TraesCS6B01G089400.1	Wheat	plastid	66.44	68.57
VIT_15s0048g02980.t01	Wine grape	plastid	60.21	63.74
GSMUA_Achr3P13860_001	Banana	plastid	61.25	62.54
KRG97220	Soybean	plastid	58.13	60.65
PGSC0003DMT400000359	Potato	cytosol	56.75	59.42
Solyc01g096240.2.1	Tomato	plastid	56.75	59.42
CDY57873	Canola	plastid	54.33	57.72
AT3G61870.1	Thale cress	plastid	53.98	57.35
Bra007634.1-P	Field mustard	plastid	54.33	57.3
CDX71700	Canola	plastid	53.63	56.78
KRH06415	Soybean	plastid	53.29	56.62
KRH68940	Soybean	nucleus	43.94	54.51
VIT_11s0149g00360.t01	Wine grape	cytosol	10.38	46.15

Protein Annotations

EnsemblPlants:EES06198	EnsemblPlantsGene:SORBI_3004G020300	EntrezGene:8055043	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF4079	PANTHER:PTHR34679	PANTHER:PTHR34679:SF2	PFAM:PF13301	ProteinID:EES06198	ProteinID:EES06198.1
RefSeq:XP_002453222.1	SEG:seg	SignalP:SignalP-noTM	TMHMM:TMhelix	unigene:Sbi.15245	UniParc:UPI0001A85F17
UniProt:C5XT25	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:1598079..1599608

Molecular Weight (calculated)

30184.8 Da

IEP (calculated)

9.632

GRAVY (calculated)

0.238

Length

289 amino acids

Sequence
(BLAST)

001: MAAPLTAVRA RLLPVTCCTA AGTGGPPPPS KNSSNRPPHL LPLPTTGTTA PPLLRLEAPA PAPSAAAAAV AAMMLALSPD EALAVGGEFG ILEGRSFALL
101: HPLVMGGLFA YTLWAGYLGW QWRRVRTIQD EVNELKKQLK PAATPAAVGA GADSSSSSPP AASPKSPVEI KIEELTEERK ALIKGSFRDR HFNAGSILLG
201: LGVLESVGGA LNTWFRTGKL FPGPHLFAGA AITVLWAAAA ALVPAMQKGD ETARSLHIAL NAVNVLLFVW QIPTGLEIVG KVFEFTTWP

Best Arabidopsis Sequence Match ( AT3G61870.1 )
(BLAST)

001: MATTLHCLST LHLLPRTHHP KTLNSLKPIT TKSQPCKTPE IPSTPNALQL LKSSSLPLAV IALPFFLDPQ DAAAAGGEFG ILEGRSFALI HPIVMGGLFA
101: YTLWTGYLGW QWRRVRTIQS EISDLKKQLK PTPVSPDGST AVDSSSPPST TELQIQRLTE ERKELVKGSY RDKHFDAGSV LLGFGVLEAV FGGVNTYLRT
201: GKLFPGPHLY AGAGITVLWA AAAALVPAMQ KGNDTARSLH IALNAVNVLL FIWQIPTGLD IVLKVFEFTK WP

Arabidopsis Description

AT3g61870/F21F14_40 [Source:UniProtKB/TrEMBL;Acc:Q9M277]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.