CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane, plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97393
KRH31520
KRH76090

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G61870.1	KRG97393	AT1G27300.1	21798944
AT3G61870.1	KRH31520	AT1G27300.1	21798944
AT3G61870.1	KRH76090	AT1G27300.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68940	Soybean	nucleus	69.68	82.83
GSMUA_Achr1P18690_001	Banana	cytosol	55.23	72.51
VIT_15s0048g02980.t01	Wine grape	plastid	68.95	69.96
Solyc01g096240.2.1	Tomato	plastid	69.31	69.57
PGSC0003DMT400000359	Potato	cytosol	69.31	69.57
KRH06415	Soybean	plastid	66.43	67.65
GSMUA_Achr3P13860_001	Banana	plastid	68.23	66.78
CDY57873	Canola	plastid	61.73	62.87
Bra007634.1-P	Field mustard	plastid	61.73	62.41
CDX71700	Canola	plastid	61.37	62.27
AT3G61870.1	Thale cress	plastid	60.65	61.76
Os02t0122500-00	Rice	plastid	58.84	58.42
EES06198	Sorghum	plastid	60.65	58.13
Zm00001d053925_P001	Maize	plastid	59.21	56.75
TraesCS6A01G066100.1	Wheat	plastid	55.6	55.8
TraesCS6B01G089400.1	Wheat	plastid	55.96	55.36
TraesCSU01G117800.1	Wheat	plastid	54.87	54.87

Protein Annotations

EMBL:ACUP02012181	EnsemblPlants:KRG97220	EnsemblPlantsGene:GLYMA_19G258300	EntrezGene:100798854	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:DUF4079	PANTHER:PTHR34679	PANTHER:PTHR34679:SF2	PFAM:PF13301	ProteinID:KRG97220
ProteinID:KRG97220.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000233EEBC	UniProt:K7N0D4	MapMan:35.2

Description

hypothetical protein

Coordinates

chr19:+:50208086..50210102

Molecular Weight (calculated)

30575.5 Da

IEP (calculated)

9.988

GRAVY (calculated)

0.145

Length

277 amino acids

Sequence
(BLAST)

001: MAATLTLLKL PILPNKPLLP RPSTSKLVPF PSIYSKLNIP KDSNPQNLPF LDQNIDALKP VFLSLSAISF PLLLETKDAL AVGGEFGILE GRSFALIHPI
101: VMGSFFLYTL WAGYLGWQWR RVRTIQNDIN ELKKQVKPNP VTPDGKPVEE AAPSPVELQI QQLTEERKEL IKGSYKDRHF NAGSILLGFG VLESVGGGVN
201: TWFRTGKLFP GPHLFAGAAI TALWALAAAL VPSMQKGNET ARNLHIALNA VNVLLFVWQI PTGIDIVFKV FEFTTWP

Best Arabidopsis Sequence Match ( AT3G61870.1 )
(BLAST)

001: MATTLHCLST LHLLPRTHHP KTLNSLKPIT TKSQPCKTPE IPSTPNALQL LKSSSLPLAV IALPFFLDPQ DAAAAGGEFG ILEGRSFALI HPIVMGGLFA
101: YTLWTGYLGW QWRRVRTIQS EISDLKKQLK PTPVSPDGST AVDSSSPPST TELQIQRLTE ERKELVKGSY RDKHFDAGSV LLGFGVLEAV FGGVNTYLRT
201: GKLFPGPHLY AGAGITVLWA AAAALVPAMQ KGNDTARSLH IALNAVNVLL FIWQIPTGLD IVLKVFEFTK WP

Arabidopsis Description

AT3g61870/F21F14_40 [Source:UniProtKB/TrEMBL;Acc:Q9M277]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.