Factsheet for PGSC0003DMT400058674

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 3
endoplasmic reticulum 3
plasma membrane 5
extracellular 2
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005150.2.1	Tomato	endoplasmic reticulum, plasma membrane	93.42	63.39
KRG89270	Soybean	plasma membrane	48.68	39.57
KRH58610	Soybean	plasma membrane	53.29	38.21
KRH49716	Soybean	plasma membrane	53.29	38.03
VIT_01s0011g06240.t01	Wine grape	plasma membrane	51.97	36.41
Bra026808.1-P	Field mustard	plasma membrane	53.29	36.16
CDY33743	Canola	plasma membrane	53.29	36.16
CDX81667	Canola	plasma membrane	52.63	35.71
KRH42515	Soybean	golgi, plasma membrane	51.32	35.29
AT1G14730.1	Thale cress	plasma membrane	51.97	35.27
CDY41099	Canola	plasma membrane	51.97	35.27
Bra026193.1-P	Field mustard	plasma membrane	51.32	34.82
CDY45283	Canola	plasma membrane	51.32	34.82
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid	43.42	30.0
Os03t0717200-00	Rice	golgi, plasma membrane, vacuole	43.42	28.95
EER93563	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	42.76	28.76
TraesCS4B01G049900.1	Wheat	plasma membrane	42.76	28.51
TraesCS4D01G050300.1	Wheat	plasma membrane	42.76	28.51
PGSC0003DMT400058673	Potato	endoplasmic reticulum	41.45	28.51
TraesCS4A01G264900.1	Wheat	plasma membrane	42.11	28.07
Zm00001d033778_P001	Maize	endoplasmic reticulum, plasma membrane, vacuole	41.45	27.88
HORVU4Hr1G008200.8	Barley	cytosol, mitochondrion, plasma membrane	42.11	27.47
PGSC0003DMT400037195	Potato	plasma membrane	39.47	25.97
PGSC0003DMT400002997	Potato	plasma membrane	37.5	24.57
PGSC0003DMT400002104	Potato	plasma membrane	32.24	20.25

Protein Annotations

EnsemblPlants:PGSC0003DMT400058674	EnsemblPlantsGene:PGSC0003DMG400022793	Gene3D:1.20.120.1770	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152
GO:GO:0016020	GO:GO:0016021	GO:GO:0055114	InterPro:Cyt_b561/ferric_Rdtase_TM	InterPro:IPR006593	PANTHER:PTHR10106
PANTHER:PTHR10106:SF15	PFAM:PF03188	PFscan:PS50939	PGSC:PGSC0003DMG400022793	SEG:seg	SMART:SM00665
TMHMM:TMhelix	UniParc:UPI000296F64E	UniProt:M1C337	MapMan:35.1	:	:

Description

Cytochrome [Source:PGSC_GENE;Acc:PGSC0003DMG400022793]

Coordinates

chr1:-:398691..399961

Molecular Weight (calculated)

17396.0 Da

IEP (calculated)

10.136

GRAVY (calculated)

0.704

Length

152 amino acids

Sequence
(BLAST)

001: MAYMTVRAEK KVQKIAHFLL HLCAIILGIV GLHAAFKYHD RRGLRNLYSF HSWIGIGTFC LYILQWVIGL CMYMLPYTRR ETRAVNLPWH ISGGRAIFYM
101: IIVTALTGLM QKSTFLQLPL FSGESILINF LAIFILLFGV TVDFSVSLGR YA

Best Arabidopsis Sequence Match ( AT1G14730.1 )
(BLAST)

001: MNLSGDRTTL KRHSSLSTLV AHFFGILAVV LMLIWLLHYR EGIEYGSDNP LKVLNVHPFL MYCGFLFLVG QAMMTYKTAY ASHQVQKMVH GGLHLIGLVL
101: GIVGICAAFR FHDKVNLKDM VSLHSWIGLT TFILLGVQWL FGAFTFLAPQ SSSGTRTRMM PWHVLGGRAL LYMGIVAALT GLMQRATMLG QSTNAESRLI
201: NFLGLAILLF GVSVDFSVAL GRYN

Arabidopsis Description

CYB561CProbable transmembrane ascorbate ferrireductase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q67ZF6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.