Factsheet for PGSC0003DMT400009351

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	nucleus, plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400022426
PGSC0003DMT400056956

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17972.1	PGSC0003DMT400022426	AT4G26455.1	21798944
AT2G17972.1	PGSC0003DMT400056956	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g083970.1.1	Tomato	plastid	92.64	93.79
VIT_04s0023g03290.t01	Wine grape	plastid	50.92	46.63
Bra039904.1-P	Field mustard	plastid	46.63	45.51
CDY38164	Canola	plastid	46.63	45.51
CDY56584	Canola	plastid	46.01	44.91
AT2G17972.1	Thale cress	plastid	41.72	43.04
KRH69789	Soybean	plastid	44.79	41.24
KRH08082	Soybean	plastid	44.17	40.22
Os06t0715200-01	Rice	plastid	42.33	35.75
TraesCS7A01G385700.1	Wheat	mitochondrion	41.72	35.42
TraesCS7D01G382300.1	Wheat	mitochondrion, plasma membrane, plastid	41.72	35.42
EER88960	Sorghum	plastid	40.49	35.11
TraesCS7B01G288600.1	Wheat	mitochondrion, plasma membrane, plastid	41.1	34.9
Zm00001d014781_P001	Maize	plastid	38.04	33.88
HORVU7Hr1G091580.1	Barley	cytosol, peroxisome, plastid	41.72	33.01

Protein Annotations

EnsemblPlants:PGSC0003DMT400009351	EnsemblPlantsGene:PGSC0003DMG401003636	EntrezGene:102587215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR36347	PGSC:PGSC0003DMG401003636	RefSeq:XP_006340728.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI000295C536	UniProt:M0ZW35	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG401003636]

Coordinates

chr2:+:39482993..39483484

Molecular Weight (calculated)

18651.6 Da

IEP (calculated)

10.197

GRAVY (calculated)

-0.498

Length

163 amino acids

Sequence
(BLAST)

001: MNTTMLCSYP KHFTPLPIQL FSKSQHRHVV RFPIKCSSSS DNGNESQPVT PPNTVEIRIR RRPSKRQRQK EEEMINAGKQ AVKPKPPPKD WESMNLTEKA
101: IELYVGEKGL LFWLNKFAYA SIFIIIGGWI LFRFVGPAFD LYQLDTPTPL APESMFKGTG DKP

Best Arabidopsis Sequence Match ( AT2G17972.1 )
(BLAST)

001: MKSLHFLAPN STIINLKQQS YTKTKFQLHR SNRRTLSINC VNSGGDEEKI TQPLDGVEIR FKRGSRRKMR EEGSGEGGGQ SGKKKETVQK PWEEMTLNEK
101: ALELYVGEKG LLFWLNKLAY ASIYIVIGGW IFFRFVGPAF NLYQLDTPPL DPKNILKG

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8S8K0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.