Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 3
- mitochondrion 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G288600.1 | Wheat | mitochondrion, plasma membrane, plastid | 98.44 | 98.44 |
| TraesCS7A01G385700.1 | Wheat | mitochondrion | 96.35 | 96.35 |
| HORVU7Hr1G091580.1 | Barley | cytosol, peroxisome, plastid | 96.35 | 89.81 |
| EER88960 | Sorghum | plastid | 56.25 | 57.45 |
| Zm00001d014781_P001 | Maize | plastid | 54.69 | 57.38 |
| Os06t0715200-01 | Rice | plastid | 56.25 | 55.96 |
| Solyc02g083970.1.1 | Tomato | plastid | 35.42 | 42.24 |
| PGSC0003DMT400009351 | Potato | plastid | 35.42 | 41.72 |
| VIT_04s0023g03290.t01 | Wine grape | plastid | 37.5 | 40.45 |
| Bra039904.1-P | Field mustard | plastid | 34.9 | 40.12 |
| CDY38164 | Canola | plastid | 34.9 | 40.12 |
| CDY56584 | Canola | plastid | 34.9 | 40.12 |
| AT2G17972.1 | Thale cress | plastid | 32.81 | 39.87 |
| KRH08082 | Soybean | plastid | 36.46 | 39.11 |
| KRH69789 | Soybean | plastid | 35.94 | 38.98 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G382300.1 | EnsemblPlantsGene:TraesCS7D01G382300 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0016020 | PANTHER:PTHR36347 |
| SEG:seg | TMHMM:TMhelix | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr7D:+:496094577..496095155
Molecular Weight (calculated)
20965.3 Da
IEP (calculated)
10.807
GRAVY (calculated)
-0.491
Length
192 amino acids
Sequence
(BLAST)
(BLAST)
001: MKHLLLPSPL PLLLHGPASK PLLLHVRQRH RHALSAAPDG NSGDTSTAAS EPPPTDTQPS PPPSAPPSTN SGTTSVKTRL RSRNQARRVQ EPYLPPVEVK
101: MMRGKGKANA SAAPRREKEK RKKTWDEMSL GEKAYELYVG EKGALFWLNK FAYASIFIIA GAWILFRFVG PATGLYQLDA PPLAPTDVLR GS
101: MMRGKGKANA SAAPRREKEK RKKTWDEMSL GEKAYELYVG EKGALFWLNK FAYASIFIIA GAWILFRFVG PATGLYQLDA PPLAPTDVLR GS
001: MKSLHFLAPN STIINLKQQS YTKTKFQLHR SNRRTLSINC VNSGGDEEKI TQPLDGVEIR FKRGSRRKMR EEGSGEGGGQ SGKKKETVQK PWEEMTLNEK
101: ALELYVGEKG LLFWLNKLAY ASIYIVIGGW IFFRFVGPAF NLYQLDTPPL DPKNILKG
101: ALELYVGEKG LLFWLNKLAY ASIYIVIGGW IFFRFVGPAF NLYQLDTPPL DPKNILKG
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8S8K0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.