Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G17972.1 | KRH56393 | AT4G26455.1 | 21798944 |
| AT2G17972.1 | KRH62532 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH69789 | Soybean | plastid | 78.21 | 79.1 |
| VIT_04s0023g03290.t01 | Wine grape | plastid | 44.69 | 44.94 |
| Solyc02g083970.1.1 | Tomato | plastid | 40.22 | 44.72 |
| PGSC0003DMT400009351 | Potato | plastid | 40.22 | 44.17 |
| Bra039904.1-P | Field mustard | plastid | 40.22 | 43.11 |
| CDY38164 | Canola | plastid | 40.22 | 43.11 |
| CDY56584 | Canola | plastid | 40.22 | 43.11 |
| AT2G17972.1 | Thale cress | plastid | 36.87 | 41.77 |
| Zm00001d014781_P001 | Maize | plastid | 37.99 | 37.16 |
| TraesCS7B01G288600.1 | Wheat | mitochondrion, plasma membrane, plastid | 39.66 | 36.98 |
| TraesCS7A01G385700.1 | Wheat | mitochondrion | 39.11 | 36.46 |
| TraesCS7D01G382300.1 | Wheat | mitochondrion, plasma membrane, plastid | 39.11 | 36.46 |
| HORVU7Hr1G091580.1 | Barley | cytosol, peroxisome, plastid | 39.66 | 34.47 |
| Os06t0715200-01 | Rice | plastid | 36.87 | 34.2 |
| EER88960 | Sorghum | plastid | 35.2 | 33.51 |
Protein Annotations
| EMBL:ACUP02010138 | EMBL:BT098843 | EnsemblPlants:KRH08082 | EnsemblPlantsGene:GLYMA_16G128900 | EntrezGene:100800524 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR36347 | ProteinID:KRH08082 | ProteinID:KRH08082.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0001B171E8 | UniProt:C6TM92 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr16:+:28114294..28115415
Molecular Weight (calculated)
20307.1 Da
IEP (calculated)
10.613
GRAVY (calculated)
-0.533
Length
179 amino acids
Sequence
(BLAST)
(BLAST)
001: METFSISRNS SSLIILTRPS TRHKPIFLPQ RHGSLTFNTI RCTTTDNNNN NTSNNNTTND DANSVQVQAP MATPTNPVEI SFRRRSRRQA KRLRENDGMQ
101: STTKGRVETP PKKWEDMSLS EKAVELYVGE KGALFWLNKF AYASIFIMIG GWIVFRFVGP AFNLYQLDGP LLSPSDVFK
101: STTKGRVETP PKKWEDMSLS EKAVELYVGE KGALFWLNKF AYASIFIMIG GWIVFRFVGP AFNLYQLDGP LLSPSDVFK
001: MKSLHFLAPN STIINLKQQS YTKTKFQLHR SNRRTLSINC VNSGGDEEKI TQPLDGVEIR FKRGSRRKMR EEGSGEGGGQ SGKKKETVQK PWEEMTLNEK
101: ALELYVGEKG LLFWLNKLAY ASIYIVIGGW IFFRFVGPAF NLYQLDTPPL DPKNILKG
101: ALELYVGEKG LLFWLNKLAY ASIYIVIGGW IFFRFVGPAF NLYQLDTPPL DPKNILKG
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8S8K0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.