CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
cytosol 1
nucleus 1
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96942
EES14314
OQU81760

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17972.1	EER96942	AT4G26455.1	21798944
AT2G17972.1	EES14314	AT4G26455.1	21798944
AT2G17972.1	OQU81760	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014781_P001	Maize	plastid	78.72	80.87
Os06t0715200-01	Rice	plastid	61.17	59.59
TraesCS7B01G288600.1	Wheat	mitochondrion, plasma membrane, plastid	58.51	57.29
TraesCS7D01G382300.1	Wheat	mitochondrion, plasma membrane, plastid	57.45	56.25
TraesCS7A01G385700.1	Wheat	mitochondrion	56.91	55.73
HORVU7Hr1G091580.1	Barley	cytosol, peroxisome, plastid	57.45	52.43
PGSC0003DMT400009351	Potato	plastid	35.11	40.49
Solyc02g083970.1.1	Tomato	plastid	34.57	40.37
Bra039904.1-P	Field mustard	plastid	35.11	39.52
CDY38164	Canola	plastid	35.11	39.52
AT2G17972.1	Thale cress	plastid	32.98	39.24
CDY56584	Canola	plastid	34.57	38.92
VIT_04s0023g03290.t01	Wine grape	plastid	35.11	37.08
KRH69789	Soybean	plastid	34.04	36.16
KRH08082	Soybean	plastid	33.51	35.2

Protein Annotations

MapMan:35.2	EntrezGene:8069193	UniProt:C5Z1V4	InterPro:DUF2839	EnsemblPlants:EER88960	ProteinID:EER88960
ProteinID:EER88960.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	GO:GO:0016021	PFAM:PF10999
PANTHER:PTHR36347	EnsemblPlantsGene:SORBI_3010G266000	unigene:Sbi.12806	TMHMM:TMhelix	UniParc:UPI0001A891BB	RefSeq:XP_002437593.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:60143949..60146954

Molecular Weight (calculated)

20156.5 Da

IEP (calculated)

11.232

GRAVY (calculated)

-0.304

Length

188 amino acids

Sequence
(BLAST)

001: MKHLVLPSPL PLLLHRPTKP HLLHPRRRLV SIRNAASGGS SGEPTPAADT ATGTSPPAGA TAKPAGVKDR LKARNQSRRV QLDSPPPEVV VVPKRKPAAS
101: SSSSSSSPAP KRKERRKEWE EMSVGEKAAE LYVGEKGLLF WLNKFAYASI FIMVGAWILF RFVGPSIGLY QLDAPPLPPT AVFGGGSP

Best Arabidopsis Sequence Match ( AT2G17972.1 )
(BLAST)

001: MKSLHFLAPN STIINLKQQS YTKTKFQLHR SNRRTLSINC VNSGGDEEKI TQPLDGVEIR FKRGSRRKMR EEGSGEGGGQ SGKKKETVQK PWEEMTLNEK
101: ALELYVGEKG LLFWLNKLAY ASIYIVIGGW IFFRFVGPAF NLYQLDTPPL DPKNILKG

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8S8K0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.