Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G081800.3 | |
| HORVU5Hr1G071910.1 | |
| HORVU7Hr1G048940.3 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G17972.1 | HORVU2Hr1G081800.3 | AT4G26455.1 | 21798944 |
| AT2G17972.1 | HORVU5Hr1G071910.1 | AT4G26455.1 | 21798944 |
| AT2G17972.1 | HORVU7Hr1G048940.3 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G288600.1 | Wheat | mitochondrion, plasma membrane, plastid | 90.29 | 96.88 |
| TraesCS7D01G382300.1 | Wheat | mitochondrion, plasma membrane, plastid | 89.81 | 96.35 |
| TraesCS7A01G385700.1 | Wheat | mitochondrion | 89.32 | 95.83 |
| EER88960 | Sorghum | plastid | 52.43 | 57.45 |
| Zm00001d014781_P001 | Maize | plastid | 50.49 | 56.83 |
| Os06t0715200-01 | Rice | plastid | 51.94 | 55.44 |
| Solyc02g083970.1.1 | Tomato | plastid | 33.01 | 42.24 |
| VIT_04s0023g03290.t01 | Wine grape | plastid | 36.41 | 42.13 |
| PGSC0003DMT400009351 | Potato | plastid | 33.01 | 41.72 |
| KRH69789 | Soybean | plastid | 34.95 | 40.68 |
| KRH08082 | Soybean | plastid | 34.47 | 39.66 |
| Bra039904.1-P | Field mustard | plastid | 32.04 | 39.52 |
| CDY38164 | Canola | plastid | 32.04 | 39.52 |
| CDY56584 | Canola | plastid | 32.04 | 39.52 |
| AT2G17972.1 | Thale cress | plastid | 30.1 | 39.24 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G091580.1 | EnsemblPlantsGene:HORVU7Hr1G091580 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0009507 | GO:GO:0009535 | GO:GO:0009536 | GO:GO:0009579 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR36347 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B47C86E | UniProt:A0A287XB94 | MapMan:35.2 |
Description
No Description!
Coordinates
chrchr7H:-:559905250..559906090
Molecular Weight (calculated)
22592.0 Da
IEP (calculated)
11.008
GRAVY (calculated)
-0.679
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: SNRRQENQTP SGDAMKHLLL PSPLPLLLHG PASKPLLLHV RHRHRHAPSA APDGNSGDTS TAASEPPPTN TQPSRPPSTP PSTNSGTTSV KTRLRSRNQA
101: RRVQDPYLPP VEVKMMRGKG KANASAAPRR EKEKRKKTWD EMSLGEKAYE LYVGEKGALF WLNKFAYASI FIMAGAWILF RFVGPATGLY QLDAPPLAPT
201: DVLRGS
101: RRVQDPYLPP VEVKMMRGKG KANASAAPRR EKEKRKKTWD EMSLGEKAYE LYVGEKGALF WLNKFAYASI FIMAGAWILF RFVGPATGLY QLDAPPLAPT
201: DVLRGS
001: MKSLHFLAPN STIINLKQQS YTKTKFQLHR SNRRTLSINC VNSGGDEEKI TQPLDGVEIR FKRGSRRKMR EEGSGEGGGQ SGKKKETVQK PWEEMTLNEK
101: ALELYVGEKG LLFWLNKLAY ASIYIVIGGW IFFRFVGPAF NLYQLDTPPL DPKNILKG
101: ALELYVGEKG LLFWLNKLAY ASIYIVIGGW IFFRFVGPAF NLYQLDTPPL DPKNILKG
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q8S8K0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.